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Gene Card

Best human hits

LIN28A; LIN28B; YBX2

Species

C.savignyi

Unique Gene ID

Cisavi.g00009125

Gene Model ID

Cisavi.CG.ENS81.R54.697028-698673

Location

R54:697027..698673

Transcript Models and Sequences

  Cisavi.CG.ENS81.R54.697028-698673.11293.t

External Database Gene Card

External database links

No result

Collections
WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

9 results

IPR Term Analysis Definition
CSP_DNA-bd Pfam Cold-shock protein, DNA-binding
Znf_CCHC Pfam Zinc finger, CCHC-type
CSD SMART Cold shock domain
Znf_CCHC ProSiteProfiles Zinc finger, CCHC-type
Znf_CCHC_sf SUPERFAMILY Zinc finger, CCHC-type superfamily
Znf_CCHC SMART Zinc finger, CCHC-type
CSP_DNA-bd CDD Cold-shock protein, DNA-binding
CSP_DNA-bd PRINTS Cold-shock protein, DNA-binding
NA-bd_OB-fold SUPERFAMILY Nucleic acid-binding, OB-fold

GOSlim

No result

GO Term Annotation Origin Type

GO (Orthology)

40 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
P-body Hs cellular component
G-quadruplex RNA binding Hs molecular function
nucleic acid binding Hs molecular function
DNA binding Hs molecular function
RNA binding Hs molecular function
mRNA binding Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleolus Hs cellular component
cytoplasm Hs cellular component
endoplasmic reticulum Hs cellular component
rough endoplasmic reticulum Hs cellular component
cytosol Hs cellular component
polysome Hs cellular component
regulation of transcription, DNA-templated Hs biological process
germ cell development Hs biological process
zinc ion binding Hs molecular function
cytoplasmic stress granule Hs cellular component
miRNA metabolic process Hs biological process
miRNA catabolic process Hs biological process
negative regulation of translation Hs biological process
stem cell population maintenance Hs biological process
intracellular ribonucleoprotein complex Hs cellular component
gene silencing by RNA Hs biological process
pre-miRNA processing Hs biological process
RNA 3'-end processing Hs biological process
translation initiation factor binding Hs molecular function
positive regulation of TOR signaling Hs biological process
somatic stem cell population maintenance Hs biological process
miRNA binding Hs molecular function
positive regulation of neuron differentiation Hs biological process
positive regulation of translation Hs biological process
metal ion binding Hs molecular function
stem cell differentiation Hs biological process
positive regulation of protein kinase B signaling Hs biological process
regulation of gene silencing by miRNA Hs biological process
cellular response to glucose stimulus Hs biological process
polysome binding Hs molecular function
sequence-specific mRNA binding Hs molecular function
positive regulation of cytoplasmic translation Hs biological process

GO (Blast)

23 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
P-body Hs cellular component 139 4.72e-42
fibrillar center Hs cellular component 58.2 2.04e-10
G-quadruplex RNA binding Hs molecular function 139 4.72e-42
nucleic acid binding Hs molecular function 141 3.52e-42
DNA binding Hs molecular function 141 3.52e-42
RNA binding Hs molecular function 141 3.52e-42
mRNA binding Hs molecular function 139 4.72e-42
protein binding Hs molecular function 141 3.52e-42
nucleus Hs cellular component 141 3.52e-42
nucleolus Hs cellular component 141 3.52e-42
cytoplasm Hs cellular component 141 3.52e-42
endoplasmic reticulum Hs cellular component 139 4.72e-42
rough endoplasmic reticulum Hs cellular component 139 4.72e-42
cytosol Hs cellular component 141 3.52e-42
polysome Hs cellular component 139 4.72e-42
zinc ion binding Hs molecular function 141 3.52e-42
cytoplasmic stress granule Hs cellular component 139 4.72e-42
intracellular ribonucleoprotein complex Hs cellular component 139 4.72e-42
translation initiation factor binding Hs molecular function 139 4.72e-42
miRNA binding Hs molecular function 139 4.72e-42
metal ion binding Hs molecular function 141 3.52e-42
polysome binding Hs molecular function 139 4.72e-42
sequence-specific mRNA binding Hs molecular function 139 4.72e-42

GO (InterProScan)

4 results

GO Term Analysis Type e-value
nucleic acid binding SMART molecular function 2.8E-16
DNA binding CDD molecular function 1.24355E-23
regulation of transcription, DNA-templated CDD biological process 1.24355E-23
zinc ion binding SUPERFAMILY molecular function 8.67E-9

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