Aniseed - Gene card

Gene Card

Best human hits

LHX1; LMX1A; LMX1B

Species

C.savignyi

Unique Gene ID

Cisavi.g00009238

Gene Model ID

Cisavi.CG.ENS81.R55.784808-797787

Location

R55:784807..797787

Transcript Models and Sequences

Cisavi.CG.ENS81.R55.784808-797787.01653.t
Cisavi.CG.ENS81.R55.784808-797787.01654.t

External Database Gene Card

External database links

No result

Collections

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

10 results

IPR Term	Analysis	Definition
Homeobox_dom	SMART	Homeobox domain
Homeobox-like_sf	SUPERFAMILY	Homeobox-like domain superfamily
Homeobox_CS	ProSitePatterns	Homeobox, conserved site
Znf_LIM	ProSitePatterns	Zinc finger, LIM-type
Homeobox_dom	ProSiteProfiles	Homeobox domain
Homeobox_dom	CDD	Homeobox domain
Znf_LIM	Pfam	Zinc finger, LIM-type
Znf_LIM	ProSiteProfiles	Zinc finger, LIM-type
Znf_LIM	SMART	Zinc finger, LIM-type
Homeobox_dom	Pfam	Homeobox domain

GOSlim

No result

GO Term	Annotation Origin	Type

GO (Orthology)

31 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
RNA polymerase II regulatory region sequence-specific DNA binding	Hs	molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function
transcription factor activity, RNA polymerase II core promoter sequence-specific	Hs	molecular function
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	Hs	molecular function
regulation of cell growth	Hs	biological process
DNA binding	Hs	molecular function
transcription factor activity, sequence-specific DNA binding	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
transcription, DNA-templated	Hs	biological process
regulation of transcription, DNA-templated	Hs	biological process
transcription from RNA polymerase II promoter	Hs	biological process
multicellular organism development	Hs	biological process
axon guidance	Hs	biological process
central nervous system development	Hs	biological process
brain development	Hs	biological process
memory	Hs	biological process
locomotory behavior	Hs	biological process
dorsal/ventral pattern formation	Hs	biological process
regulation of gene expression	Hs	biological process
cerebellum development	Hs	biological process
central nervous system neuron differentiation	Hs	biological process
neuron differentiation	Hs	biological process
midbrain development	Hs	biological process
olfactory behavior	Hs	biological process
sequence-specific DNA binding	Hs	molecular function
negative regulation of neuron differentiation	Hs	biological process
positive regulation of transcription from RNA polymerase II promoter	Hs	biological process
metal ion binding	Hs	molecular function
synapse organization	Hs	biological process
dopaminergic neuron differentiation	Hs	biological process

GO (Blast)

12 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA polymerase II regulatory region sequence-specific DNA binding	Hs	molecular function	204	3.82e-59
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function	204	3.82e-59
transcription factor activity, RNA polymerase II core promoter sequence-specific	Hs	molecular function	204	3.82e-59
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	Hs	molecular function	186	5.95e-53
DNA binding	Hs	molecular function	204	3.82e-59
transcription factor activity, sequence-specific DNA binding	Hs	molecular function	204	3.82e-59
transcription corepressor activity	Hs	molecular function	144	1.46e-37
protein binding	Hs	molecular function	204	3.82e-59
nucleus	Hs	cellular component	204	3.82e-59
macromolecular complex	Hs	cellular component	144	1.46e-37
sequence-specific DNA binding	Hs	molecular function	204	3.82e-59
metal ion binding	Hs	molecular function	204	3.82e-59

GO (InterProScan)

3 results

GO Term	Analysis	Type	e-value
DNA binding	CDD	molecular function	2.26061E-16
regulation of transcription, DNA-templated	ProSitePatterns	biological process
sequence-specific DNA binding	ProSitePatterns	molecular function