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GENE CARD

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Gene Card

Best human hits

POLR1A; POLR2A; POLR3A

Species

C.savignyi

Unique Gene ID

Cisavi.g00009929

Gene Model ID

Cisavi.CG.ENS81.R67.1507499-1523609

Location

R67:1507498..1523609

Transcript Models and Sequences

  Cisavi.CG.ENS81.R67.1507499-1523609.14368.t
Cisavi.CG.ENS81.R67.1507499-1523609.14369.t
Cisavi.CG.ENS81.R67.1507499-1523609.14370.t
Cisavi.CG.ENS81.R67.1507499-1523609.14371.t
Cisavi.CG.ENS81.R67.1507499-1523609.14372.t
Cisavi.CG.ENS81.R67.1507499-1523609.14373.t
Cisavi.CG.ENS81.R67.1507499-1523609.14374.t
Cisavi.CG.ENS81.R67.1507499-1523609.14375.t
Cisavi.CG.ENS81.R67.1507499-1523609.14376.t
Cisavi.CG.ENS81.R67.1507499-1523609.14377.t

External Database Gene Card

External database links

No result

Collections
WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

12 results

IPR Term Analysis Definition
RNA_pol_Rpb1_7 Pfam RNA polymerase Rpb1, domain 7
RNA_pol_asu Pfam RNA polymerase, alpha subunit
RNA_pol_Rpb1_1 Pfam RNA polymerase Rpb1, domain 1
RNA_pol_Rpb1_7_sf Gene3D RNA polymerase Rpb1, domain 7 superfamily
RNA_pol_II_repeat_euk ProSitePatterns RNA polymerase II, heptapeptide repeat, eukaryotic
Rpb1_funnel_sf Gene3D RNA polymerase Rpb1, funnel domain superfamily
RNA_pol_N SMART RNA polymerase, N-terminal
RNA_pol_Rpb1_4 Pfam RNA polymerase Rpb1, domain 4
RNA_pol_Rpb1_3 Pfam RNA polymerase Rpb1, domain 3
RNA_pol_Rpb1_6 Pfam RNA polymerase Rpb1, domain 6
RNA_pol_Rpb1_5 Pfam RNA polymerase Rpb1, domain 5
RNA_pol_II_repeat_euk Pfam RNA polymerase II, heptapeptide repeat, eukaryotic

GOSlim

No result

GO Term Annotation Origin Type

GO (Orthology)

32 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
mRNA splicing, via spliceosome Hs biological process
Prp19 complex Hs cellular component
RNA polymerase II activity Hs molecular function
transcription, RNA-templated Hs biological process
DNA binding Hs molecular function
RNA binding Hs molecular function
DNA-directed 5'-3' RNA polymerase activity Hs molecular function
RNA-directed 5'-3' RNA polymerase activity Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
DNA-directed RNA polymerase II, core complex Hs cellular component
cytoplasm Hs cellular component
transcription-coupled nucleotide-excision repair Hs biological process
transcription, DNA-templated Hs biological process
DNA-templated transcription, termination Hs biological process
regulation of transcription, DNA-templated Hs biological process
transcription from RNA polymerase II promoter Hs biological process
transcription initiation from RNA polymerase II promoter Hs biological process
transcription elongation from RNA polymerase II promoter Hs biological process
7-methylguanosine mRNA capping Hs biological process
fibroblast growth factor receptor signaling pathway Hs biological process
RNA metabolic process Hs biological process
transferase activity Hs molecular function
nucleotidyltransferase activity Hs molecular function
ubiquitin protein ligase binding Hs molecular function
positive regulation of RNA splicing Hs biological process
somatic stem cell population maintenance Hs biological process
snRNA transcription from RNA polymerase II promoter Hs biological process
metal ion binding Hs molecular function
regulation of gene silencing by miRNA Hs biological process
promoter-specific chromatin binding Hs molecular function

GO (Blast)

25 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
Prp19 complex Hs cellular component 2623 0.0
RNA polymerase I activity Hs molecular function 335 6.16e-93
RNA polymerase II activity Hs molecular function 2623 0.0
RNA polymerase III activity Hs molecular function 565 9.37e-173
DNA binding Hs molecular function 2623 0.0
chromatin binding Hs molecular function 565 9.37e-173
RNA binding Hs molecular function 2623 0.0
DNA-directed 5'-3' RNA polymerase activity Hs molecular function 2623 0.0
RNA-directed 5'-3' RNA polymerase activity Hs molecular function 2623 0.0
protein binding Hs molecular function 2623 0.0
nucleus Hs cellular component 2623 0.0
nucleoplasm Hs cellular component 2623 0.0
DNA-directed RNA polymerase II, core complex Hs cellular component 2623 0.0
DNA-directed RNA polymerase III complex Hs cellular component 565 9.37e-173
nucleolus Hs cellular component 335 6.16e-93
DNA-directed RNA polymerase I complex Hs cellular component 335 6.16e-93
cytoplasm Hs cellular component 2623 0.0
cytosol Hs cellular component 565 9.37e-173
zinc ion binding Hs molecular function 335 6.16e-93
membrane Hs cellular component 565 9.37e-173
transferase activity Hs molecular function 2623 0.0
nucleotidyltransferase activity Hs molecular function 2623 0.0
ubiquitin protein ligase binding Hs molecular function 2623 0.0
metal ion binding Hs molecular function 2623 0.0
promoter-specific chromatin binding Hs molecular function 2623 0.0

GO (InterProScan)

5 results

GO Term Analysis Type e-value
DNA binding SMART molecular function 3.3E-198
DNA-directed 5'-3' RNA polymerase activity SMART molecular function 3.3E-198
DNA-directed RNA polymerase II, core complex Pfam cellular component 0.02
transcription, DNA-templated SMART biological process 3.3E-198
transcription from RNA polymerase II promoter Pfam biological process 0.02

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