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GENE CARD

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Gene Card

Best human hits

NONO; PSPC1; SFPQ

Species

C.savignyi

Unique Gene ID

Cisavi.g00010681

Gene Model ID

Cisavi.CG.ENS81.R77.1008359-1021104

Location

R77:1008358..1021104

Transcript Models and Sequences

  Cisavi.CG.ENS81.R77.1008359-1021104.05996.t

External Database Gene Card

External database links

No result

Collections
WashU Genome Browser

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Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term Analysis Definition
RRM_dom SMART RNA recognition motif domain
Nucleotide-bd_a/b_plait_sf Gene3D Nucleotide-binding alpha-beta plait domain superfamily
RRM_dom ProSiteProfiles RNA recognition motif domain
NOPS Pfam NOPS
RBD_domain_sf SUPERFAMILY RNA-binding domain superfamily
RRM_dom Pfam RNA recognition motif domain

GOSlim

No result

GO Term Annotation Origin Type

GO (Orthology)

46 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
negative regulation of transcription from RNA polymerase II promoter Hs biological process
alternative mRNA splicing, via spliceosome Hs biological process
mRNA splicing, via spliceosome Hs biological process
double-strand break repair via homologous recombination Hs biological process
chromatin Hs cellular component
transcription regulatory region sequence-specific DNA binding Hs molecular function
RNA polymerase II distal enhancer sequence-specific DNA binding Hs molecular function
core promoter binding Hs molecular function
fibrillar center Hs cellular component
activation of innate immune response Hs biological process
immune system process Hs biological process
nucleic acid binding Hs molecular function
DNA binding Hs molecular function
chromatin binding Hs molecular function
RNA binding Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
nucleolus Hs cellular component
cytoplasm Hs cellular component
DNA repair Hs biological process
DNA recombination Hs biological process
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
mRNA processing Hs biological process
cellular response to DNA damage stimulus Hs biological process
circadian rhythm Hs biological process
RNA splicing Hs biological process
membrane Hs cellular component
nuclear matrix Hs cellular component
nuclear speck Hs cellular component
paraspeckles Hs cellular component
regulation of circadian rhythm Hs biological process
negative regulation of circadian rhythm Hs biological process
identical protein binding Hs molecular function
protein homodimerization activity Hs molecular function
histone deacetylase binding Hs molecular function
transcription regulatory region DNA binding Hs molecular function
innate immune response Hs biological process
negative regulation of transcription, DNA-templated Hs biological process
positive regulation of transcription from RNA polymerase II promoter Hs biological process
rhythmic process Hs biological process
chromosome organization Hs biological process
regulation of cell cycle Hs biological process
histone H3 deacetylation Hs biological process
RNA polymerase II transcription factor complex Hs cellular component

GO (Blast)

23 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
chromatin Hs cellular component 343 2.91e-110
transcription regulatory region sequence-specific DNA binding Hs molecular function 343 2.91e-110
RNA polymerase II distal enhancer sequence-specific DNA binding Hs molecular function 343 2.91e-110
core promoter binding Hs molecular function 343 2.91e-110
fibrillar center Hs cellular component 330 3.16e-107
nucleic acid binding Hs molecular function 343 2.91e-110
DNA binding Hs molecular function 343 2.91e-110
chromatin binding Hs molecular function 343 2.91e-110
RNA binding Hs molecular function 343 2.91e-110
protein binding Hs molecular function 343 2.91e-110
nucleus Hs cellular component 343 2.91e-110
nucleoplasm Hs cellular component 343 2.91e-110
nucleolus Hs cellular component 331 2.40e-108
cytoplasm Hs cellular component 343 2.91e-110
membrane Hs cellular component 331 2.40e-108
nuclear matrix Hs cellular component 343 2.91e-110
nuclear speck Hs cellular component 343 2.91e-110
paraspeckles Hs cellular component 343 2.91e-110
identical protein binding Hs molecular function 331 2.40e-108
protein homodimerization activity Hs molecular function 343 2.91e-110
histone deacetylase binding Hs molecular function 343 2.91e-110
transcription regulatory region DNA binding Hs molecular function 343 2.91e-110
RNA polymerase II transcription factor complex Hs cellular component 343 2.91e-110

GO (InterProScan)

1 result

GO Term Analysis Type e-value
nucleic acid binding SUPERFAMILY molecular function 2.45E-33

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