Aniseed - Gene card

Gene Card

Best human hits

CELF3; CELF4; CELF5

Species

C.savignyi

Unique Gene ID

Cisavi.g00010774

Gene Model ID

Cisavi.CG.ENS81.R77.2730723-2748290

Location

R77:2730722..2748290

Transcript Models and Sequences

Cisavi.CG.ENS81.R77.2730723-2748290.12983.t
Cisavi.CG.ENS81.R77.2730723-2748290.12984.t
Cisavi.CG.ENS81.R77.2730723-2748290.12985.t
Cisavi.CG.ENS81.R77.2730723-2748290.12986.t
Cisavi.CG.ENS81.R77.2730723-2748290.12987.t
Cisavi.CG.ENS81.R77.2730723-2748290.12988.t
Cisavi.CG.ENS81.R77.2730723-2748290.12989.t
Cisavi.CG.ENS81.R77.2730723-2748290.12990.t
Cisavi.CG.ENS81.R77.2730723-2748290.12991.t
Cisavi.CG.ENS81.R77.2730723-2748290.12992.t

External Database Gene Card

External database links

No result

Collections

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term	Analysis	Definition
CELF3/4/5/6_RRM1	CDD	CELF-3/4/5/6, RNA recognition motif 1
RRM_dom	Pfam	RNA recognition motif domain
RRM_dom	ProSiteProfiles	RNA recognition motif domain
RRM_dom	SMART	RNA recognition motif domain
Nucleotide-bd_a/b_plait_sf	Gene3D	Nucleotide-binding alpha-beta plait domain superfamily
RBD_domain_sf	SUPERFAMILY	RNA-binding domain superfamily

GOSlim

No result

GO Term	Annotation Origin	Type

GO (Orthology)

No result

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type

GO (Blast)

10 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
translation repressor activity, nucleic acid binding	Hs	molecular function	296	3.06e-94
nucleic acid binding	Hs	molecular function	407	9.05e-138
RNA binding	Hs	molecular function	407	9.05e-138
mRNA binding	Hs	molecular function	296	3.06e-94
nucleus	Hs	cellular component	407	9.05e-138
cytoplasm	Hs	cellular component	407	9.05e-138
nuclear body	Hs	cellular component	391	1.42e-131
pre-mRNA binding	Hs	molecular function	407	9.05e-138
BRE binding	Hs	molecular function	296	3.06e-94
7SK snRNA binding	Hs	molecular function	391	1.42e-131

GO (InterProScan)

2 results

GO Term	Analysis	Type	e-value
nucleic acid binding	SUPERFAMILY	molecular function	6.83E-41
RNA binding	CDD	molecular function	7.38196E-55