Aniseed - Gene card

Gene Card

Best human hits

LHX3; LHX4; LHX5

Species

C.savignyi

Unique Gene ID

Cisavi.g00010903

Gene Model ID

Cisavi.CG.ENS81.R828.13291-23078

Location

R828:13290..23078

Transcript Models and Sequences

Cisavi.CG.ENS81.R828.13291-23078.01074.t
Cisavi.CG.ENS81.R828.13291-23078.01075.t

External Database Gene Card

External database links

No result

Collections

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

10 results

IPR Term	Analysis	Definition
Znf_LIM	Pfam	Zinc finger, LIM-type
Homeobox_CS	ProSitePatterns	Homeobox, conserved site
Homeobox_dom	SMART	Homeobox domain
Znf_LIM	SMART	Zinc finger, LIM-type
Homeobox_dom	ProSiteProfiles	Homeobox domain
Homeobox-like_sf	SUPERFAMILY	Homeobox-like domain superfamily
Znf_LIM	ProSitePatterns	Zinc finger, LIM-type
Homeobox_dom	Pfam	Homeobox domain
Homeobox_dom	CDD	Homeobox domain
Znf_LIM	ProSiteProfiles	Zinc finger, LIM-type

GOSlim

No result

GO Term	Annotation Origin	Type

GO (Orthology)

29 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Hs	molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function
transcription factor activity, RNA polymerase II transcription factor binding	Hs	molecular function
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding	Hs	molecular function
RNA polymerase II transcription factor binding	Hs	molecular function
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	Hs	molecular function
DNA binding	Hs	molecular function
protein binding	Hs	molecular function
intracellular	Hs	cellular component
nucleus	Hs	cellular component
transcription factor complex	Hs	cellular component
transcription, DNA-templated	Hs	biological process
regulation of transcription, DNA-templated	Hs	biological process
transcription from RNA polymerase II promoter	Hs	biological process
motor neuron axon guidance	Hs	biological process
animal organ morphogenesis	Hs	biological process
dorsal/ventral pattern formation	Hs	biological process
spinal cord motor neuron cell fate specification	Hs	biological process
ventral spinal cord interneuron specification	Hs	biological process
spinal cord association neuron differentiation	Hs	biological process
pituitary gland development	Hs	biological process
cell differentiation	Hs	biological process
lung development	Hs	biological process
negative regulation of apoptotic process	Hs	biological process
sequence-specific DNA binding	Hs	molecular function
positive regulation of transcription, DNA-templated	Hs	biological process
positive regulation of transcription from RNA polymerase II promoter	Hs	biological process
metal ion binding	Hs	molecular function
inner ear development	Hs	biological process

GO (Blast)

13 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Hs	molecular function	328	9.15e-108
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function	331	3.70e-109
transcription factor activity, RNA polymerase II transcription factor binding	Hs	molecular function	328	9.15e-108
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding	Hs	molecular function	328	9.15e-108
RNA polymerase II transcription factor binding	Hs	molecular function	328	9.15e-108
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	Hs	molecular function	331	3.70e-109
DNA binding	Hs	molecular function	331	3.70e-109
protein binding	Hs	molecular function	331	3.70e-109
intracellular	Hs	cellular component	331	3.70e-109
nucleus	Hs	cellular component	331	3.70e-109
transcription factor complex	Hs	cellular component	328	9.15e-108
sequence-specific DNA binding	Hs	molecular function	331	3.70e-109
metal ion binding	Hs	molecular function	331	3.70e-109

GO (InterProScan)

3 results

GO Term	Analysis	Type	e-value
DNA binding	SMART	molecular function	3.3E-21
regulation of transcription, DNA-templated	ProSitePatterns	biological process
sequence-specific DNA binding	ProSitePatterns	molecular function