Aniseed - Gene card

Gene Card

Best human hits

NELFE

Species

C.savignyi

Unique Gene ID

Cisavi.g00011573

Gene Model ID

Cisavi.CG.ENS81.R99.177238-182374

Location

R99:177237..182374

Transcript Models and Sequences

Cisavi.CG.ENS81.R99.177238-182374.07170.t

External Database Gene Card

External database links

No result

Collections

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

7 results

IPR Term	Analysis	Definition
RBD_domain_sf	SUPERFAMILY	RNA-binding domain superfamily
RRM_dom	ProSiteProfiles	RNA recognition motif domain
Nucleotide-bd_a/b_plait_sf	Gene3D	Nucleotide-binding alpha-beta plait domain superfamily
NELFE_RRM	CDD	Negative elongation factor E, RNA recognition motif
RRM_dom	SMART	RNA recognition motif domain
NELFE	PANTHER	Negative elongation factor E
RRM_dom	Pfam	RNA recognition motif domain

GOSlim

No result

GO Term	Annotation Origin	Type

GO (Orthology)

19 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
negative regulation of transcription from RNA polymerase II promoter	Hs	biological process
nucleic acid binding	Hs	molecular function
chromatin binding	Hs	molecular function
RNA binding	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
plasma membrane	Hs	cellular component
transcription, DNA-templated	Hs	biological process
regulation of transcription, DNA-templated	Hs	biological process
transcription from RNA polymerase II promoter	Hs	biological process
transcription elongation from RNA polymerase II promoter	Hs	biological process
nuclear body	Hs	cellular component
NELF complex	Hs	cellular component
negative regulation of transcription elongation from RNA polymerase II promoter	Hs	biological process
positive regulation of transcription from RNA polymerase II promoter	Hs	biological process
positive regulation of histone H3-K4 methylation	Hs	biological process
positive regulation of ERK1 and ERK2 cascade	Hs	biological process
negative regulation of mRNA polyadenylation	Hs	biological process

GO (Blast)

9 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
nucleic acid binding	Hs	molecular function	109	1.10e-27
chromatin binding	Hs	molecular function	109	1.10e-27
RNA binding	Hs	molecular function	109	1.10e-27
protein binding	Hs	molecular function	109	1.10e-27
nucleus	Hs	cellular component	109	1.10e-27
nucleoplasm	Hs	cellular component	109	1.10e-27
plasma membrane	Hs	cellular component	109	1.10e-27
nuclear body	Hs	cellular component	109	1.10e-27
NELF complex	Hs	cellular component	109	1.10e-27

GO (InterProScan)

3 results

GO Term	Analysis	Type	e-value
nucleic acid binding	SUPERFAMILY	molecular function	7.06E-18
regulation of transcription, DNA-templated	PANTHER	biological process	1.9E-64
NELF complex	PANTHER	cellular component	1.9E-64