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Gene Card

Best human hits

NHP2; RPL7A; SNU13

Species

H.aurantium

Unique Gene ID

Haaura.g00004050

Gene Model ID

Haaura.CG.MTP2014.S291.g04050

Location

S291:7021..7529

Transcript Models and Sequences

  Haaura.CG.MTP2014.S291.g04050.01.t

External Database Gene Card

External database links

No result

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WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

5 results

IPR Term Analysis Definition
L30e-like Gene3D 50S ribosomal protein L30e-like
Ribosomal_L7Ae/L8/Nhp2 PRINTS Ribosomal protein L7Ae/L8/Nhp2 family
L30e-like SUPERFAMILY 50S ribosomal protein L30e-like
Ribosomal_L7Ae/L30e/S12e/Gad45 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45
H/ACA_rnp_Nhp2_euk PRINTS H/ACA ribonucleoprotein complex, subunit Nhp2, eukaryote

GOSlim

No result

GO Term Annotation Origin Type

GO (Orthology)

30 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
mRNA splicing, via spliceosome Hs biological process
maturation of LSU-rRNA Hs biological process
box C/D snoRNP assembly Hs biological process
dense fibrillar component Hs cellular component
RNA binding Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
spliceosomal complex Hs cellular component
U4atac snRNP Hs cellular component
nucleolus Hs cellular component
rRNA processing Hs biological process
mRNA processing Hs biological process
single fertilization Hs biological process
RNA splicing Hs biological process
maturation of SSU-rRNA Hs biological process
snoRNA binding Hs molecular function
intracellular ribonucleoprotein complex Hs cellular component
U4 snRNA binding Hs molecular function
U4atac snRNA binding Hs molecular function
box C/D snoRNP complex Hs cellular component
small-subunit processome Hs cellular component
macromolecular complex Hs cellular component
U3 snoRNA binding Hs molecular function
box C/D snoRNA binding Hs molecular function
ribosome biogenesis Hs biological process
U4/U6 x U5 tri-snRNP complex Hs cellular component
ATPase binding Hs molecular function
U2-type precatalytic spliceosome Hs cellular component
precatalytic spliceosome Hs cellular component

GO (Blast)

40 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
nuclear chromosome, telomeric region Hs cellular component 87.8 3.40e-23
dense fibrillar component Hs cellular component 187 8.87e-63
RNA binding Hs molecular function 187 8.87e-63
structural constituent of ribosome Hs molecular function 44.7 2.78e-06
protein binding Hs molecular function 187 8.87e-63
nucleus Hs cellular component 187 8.87e-63
nucleoplasm Hs cellular component 187 8.87e-63
spliceosomal complex Hs cellular component 187 8.87e-63
U4atac snRNP Hs cellular component 187 8.87e-63
telomerase holoenzyme complex Hs cellular component 87.8 3.40e-23
nucleolus Hs cellular component 187 8.87e-63
small nucleolar ribonucleoprotein complex Hs cellular component 87.8 3.40e-23
cytoplasm Hs cellular component 44.7 2.78e-06
cytosol Hs cellular component 44.7 2.78e-06
ribosome Hs cellular component 44.7 2.78e-06
focal adhesion Hs cellular component 44.7 2.78e-06
Cajal body Hs cellular component 87.8 3.40e-23
membrane Hs cellular component 44.7 2.78e-06
cytosolic large ribosomal subunit Hs cellular component 44.7 2.78e-06
snoRNA binding Hs molecular function 187 8.87e-63
intracellular ribonucleoprotein complex Hs cellular component 187 8.87e-63
U4 snRNA binding Hs molecular function 187 8.87e-63
U4atac snRNA binding Hs molecular function 187 8.87e-63
box C/D snoRNP complex Hs cellular component 187 8.87e-63
box H/ACA snoRNP complex Hs cellular component 87.8 3.40e-23
small-subunit processome Hs cellular component 187 8.87e-63
macromolecular complex Hs cellular component 187 8.87e-63
U3 snoRNA binding Hs molecular function 187 8.87e-63
box C/D snoRNA binding Hs molecular function 187 8.87e-63
box H/ACA snoRNA binding Hs molecular function 87.8 3.40e-23
polysomal ribosome Hs cellular component 44.7 2.78e-06
cadherin binding Hs molecular function 44.7 2.78e-06
U4/U6 x U5 tri-snRNP complex Hs cellular component 187 8.87e-63
ATPase binding Hs molecular function 187 8.87e-63
telomerase RNA binding Hs molecular function 87.8 3.40e-23
extracellular exosome Hs cellular component 44.7 2.78e-06
U2-type precatalytic spliceosome Hs cellular component 187 8.87e-63
precatalytic spliceosome Hs cellular component 187 8.87e-63
box H/ACA scaRNP complex Hs cellular component 87.8 3.40e-23
box H/ACA telomerase RNP complex Hs cellular component 87.8 3.40e-23

GO (InterProScan)

2 results

GO Term Analysis Type e-value
RNA binding PRINTS molecular function 3.2E-28
nucleolus PRINTS cellular component 3.2E-28

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