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Gene Card

Best human hits

LIN28A; LIN28B; YBX2

Species

H.aurantium

Unique Gene ID

Haaura.g00004254

Gene Model ID

Haaura.CG.MTP2014.S318.g04254

Location

S318:30746..31548

Transcript Models and Sequences

  Haaura.CG.MTP2014.S318.g04254.01.t

External Database Gene Card

External database links

No result

Collections
WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

4 results

IPR Term Analysis Definition
Znf_CCHC ProSiteProfiles Zinc finger, CCHC-type
Znf_CCHC SMART Zinc finger, CCHC-type
Znf_CCHC_sf SUPERFAMILY Zinc finger, CCHC-type superfamily
Znf_CCHC Pfam Zinc finger, CCHC-type

GOSlim

No result

GO Term Annotation Origin Type

GO (Orthology)

40 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
P-body Hs cellular component
G-quadruplex RNA binding Hs molecular function
nucleic acid binding Hs molecular function
DNA binding Hs molecular function
RNA binding Hs molecular function
mRNA binding Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleolus Hs cellular component
cytoplasm Hs cellular component
endoplasmic reticulum Hs cellular component
rough endoplasmic reticulum Hs cellular component
cytosol Hs cellular component
polysome Hs cellular component
regulation of transcription, DNA-templated Hs biological process
germ cell development Hs biological process
zinc ion binding Hs molecular function
cytoplasmic stress granule Hs cellular component
miRNA metabolic process Hs biological process
miRNA catabolic process Hs biological process
negative regulation of translation Hs biological process
stem cell population maintenance Hs biological process
intracellular ribonucleoprotein complex Hs cellular component
gene silencing by RNA Hs biological process
pre-miRNA processing Hs biological process
RNA 3'-end processing Hs biological process
translation initiation factor binding Hs molecular function
positive regulation of TOR signaling Hs biological process
somatic stem cell population maintenance Hs biological process
miRNA binding Hs molecular function
positive regulation of neuron differentiation Hs biological process
positive regulation of translation Hs biological process
metal ion binding Hs molecular function
stem cell differentiation Hs biological process
positive regulation of protein kinase B signaling Hs biological process
regulation of gene silencing by miRNA Hs biological process
cellular response to glucose stimulus Hs biological process
polysome binding Hs molecular function
sequence-specific mRNA binding Hs molecular function
positive regulation of cytoplasmic translation Hs biological process

GO (Blast)

23 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
P-body Hs cellular component 131 8.08e-39
fibrillar center Hs cellular component 50.1 9.35e-08
G-quadruplex RNA binding Hs molecular function 131 8.08e-39
nucleic acid binding Hs molecular function 132 9.17e-39
DNA binding Hs molecular function 132 9.17e-39
RNA binding Hs molecular function 132 9.17e-39
mRNA binding Hs molecular function 131 8.08e-39
protein binding Hs molecular function 132 9.17e-39
nucleus Hs cellular component 132 9.17e-39
nucleolus Hs cellular component 132 9.17e-39
cytoplasm Hs cellular component 132 9.17e-39
endoplasmic reticulum Hs cellular component 131 8.08e-39
rough endoplasmic reticulum Hs cellular component 131 8.08e-39
cytosol Hs cellular component 132 9.17e-39
polysome Hs cellular component 131 8.08e-39
zinc ion binding Hs molecular function 132 9.17e-39
cytoplasmic stress granule Hs cellular component 131 8.08e-39
intracellular ribonucleoprotein complex Hs cellular component 131 8.08e-39
translation initiation factor binding Hs molecular function 131 8.08e-39
miRNA binding Hs molecular function 131 8.08e-39
metal ion binding Hs molecular function 132 9.17e-39
polysome binding Hs molecular function 131 8.08e-39
sequence-specific mRNA binding Hs molecular function 131 8.08e-39

GO (InterProScan)

2 results

GO Term Analysis Type e-value
nucleic acid binding SUPERFAMILY molecular function 2.99E-11
zinc ion binding SUPERFAMILY molecular function 2.99E-11

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