Aniseed - Gene card

Gene Card

Best human hits

RPS3

Species

H.aurantium

Unique Gene ID

Haaura.g00010620

Gene Model ID

Haaura.CG.MTP2014.S4317.g10620

Location

S4317:2443..5735

Transcript Models and Sequences

Haaura.CG.MTP2014.S4317.g10620.01.t

External Database Gene Card

External database links

No result

Collections

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.

Click here to see how you can interact with this tree
Click here to see the tree inference method

Gene Annotations

InterPro

9 results

IPR Term	Analysis	Definition
Ribosomal_S3_C_sf	SUPERFAMILY	Ribosomal protein S3, C-terminal domain superfamily
KH_dom_type_2	Pfam	K Homology domain, type 2
KH_sf_prok-type	SUPERFAMILY	K homology domain superfamily, prokaryotic type
Ribosomal_S3_euk/arc	TIGRFAM	Ribosomal protein S3, eukaryotic/archaeal
Ribosomal_S3_C_sf	Gene3D	Ribosomal protein S3, C-terminal domain superfamily
Ribosomal_S3_C	Pfam	Ribosomal protein S3, C-terminal
Ribosomal_S3_CS	ProSitePatterns	Ribosomal protein S3, conserved site
KH_dom-like_a/b	Gene3D	K homology domain-like, alpha/beta
KH_dom_type_2	ProSiteProfiles	K Homology domain, type 2

GOSlim

No result

GO Term	Annotation Origin	Type

GO (Orthology)

84 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Hs	biological process
RNA polymerase II regulatory region sequence-specific DNA binding	Hs	molecular function
cytoplasmic translation	Hs	biological process
DNA binding	Hs	molecular function
damaged DNA binding	Hs	molecular function
RNA binding	Hs	molecular function
mRNA binding	Hs	molecular function
structural constituent of ribosome	Hs	molecular function
DNA-(apurinic or apyrimidinic site) lyase activity	Hs	molecular function
endodeoxyribonuclease activity	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
nucleolus	Hs	cellular component
cytoplasm	Hs	cellular component
mitochondrion	Hs	cellular component
mitochondrial inner membrane	Hs	cellular component
mitochondrial matrix	Hs	cellular component
endoplasmic reticulum	Hs	cellular component
spindle	Hs	cellular component
cytosol	Hs	cellular component
ribosome	Hs	cellular component
polysome	Hs	cellular component
cytoskeleton	Hs	cellular component
plasma membrane	Hs	cellular component
focal adhesion	Hs	cellular component
DNA repair	Hs	biological process
transcription, DNA-templated	Hs	biological process
regulation of transcription, DNA-templated	Hs	biological process
rRNA processing	Hs	biological process
translation	Hs	biological process
translational initiation	Hs	biological process
regulation of translation	Hs	biological process
SRP-dependent cotranslational protein targeting to membrane	Hs	biological process
apoptotic process	Hs	biological process
cellular response to DNA damage stimulus	Hs	biological process
response to oxidative stress	Hs	biological process
cell cycle	Hs	biological process
chromosome segregation	Hs	biological process
microtubule binding	Hs	molecular function
transcription factor binding	Hs	molecular function
positive regulation of gene expression	Hs	biological process
tubulin binding	Hs	molecular function
small ribosomal subunit	Hs	cellular component
membrane	Hs	cellular component
lyase activity	Hs	molecular function
negative regulation of translation	Hs	biological process
enzyme binding	Hs	molecular function
kinase binding	Hs	molecular function
protein kinase binding	Hs	molecular function
cytosolic small ribosomal subunit	Hs	cellular component
intracellular ribonucleoprotein complex	Hs	cellular component
Hsp70 protein binding	Hs	molecular function
positive regulation of microtubule polymerization	Hs	biological process
positive regulation of protein complex assembly	Hs	biological process
negative regulation of protein ubiquitination	Hs	biological process
oxidized purine DNA binding	Hs	molecular function
oxidized pyrimidine DNA binding	Hs	molecular function
ruffle membrane	Hs	cellular component
DNA damage response, detection of DNA damage	Hs	biological process
regulation of apoptotic process	Hs	biological process
positive regulation of JUN kinase activity	Hs	biological process
ubiquitin-like protein conjugating enzyme binding	Hs	molecular function
macromolecular complex binding	Hs	molecular function
positive regulation of DNA repair	Hs	biological process
positive regulation of T cell receptor signaling pathway	Hs	biological process
protein kinase A binding	Hs	molecular function
positive regulation of NF-kappaB transcription factor activity	Hs	biological process
spindle assembly	Hs	biological process
cell division	Hs	biological process
iron-sulfur cluster binding	Hs	molecular function
Hsp90 protein binding	Hs	molecular function
extracellular exosome	Hs	cellular component
small ribosomal subunit rRNA binding	Hs	molecular function
cellular response to hydrogen peroxide	Hs	biological process
NF-kappaB complex	Hs	cellular component
cellular response to tumor necrosis factor	Hs	biological process
mitotic spindle	Hs	cellular component
supercoiled DNA binding	Hs	molecular function
class I DNA-(apurinic or apyrimidinic site) lyase activity	Hs	molecular function
class III/IV DNA-(apurinic or apyrimidinic site) lyase activity	Hs	molecular function
positive regulation of intrinsic apoptotic signaling pathway in response to DNA damage	Hs	biological process
positive regulation of apoptotic signaling pathway	Hs	biological process
positive regulation of cysteine-type endopeptidase activity involved in execution phase of apoptosis	Hs	biological process

GO (Blast)

51 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA polymerase II regulatory region sequence-specific DNA binding	Hs	molecular function	396	8.91e-141
DNA binding	Hs	molecular function	396	8.91e-141
damaged DNA binding	Hs	molecular function	396	8.91e-141
RNA binding	Hs	molecular function	396	8.91e-141
mRNA binding	Hs	molecular function	396	8.91e-141
structural constituent of ribosome	Hs	molecular function	396	8.91e-141
DNA-(apurinic or apyrimidinic site) lyase activity	Hs	molecular function	396	8.91e-141
endodeoxyribonuclease activity	Hs	molecular function	396	8.91e-141
protein binding	Hs	molecular function	396	8.91e-141
nucleus	Hs	cellular component	396	8.91e-141
nucleoplasm	Hs	cellular component	396	8.91e-141
nucleolus	Hs	cellular component	396	8.91e-141
cytoplasm	Hs	cellular component	396	8.91e-141
mitochondrion	Hs	cellular component	396	8.91e-141
mitochondrial inner membrane	Hs	cellular component	396	8.91e-141
mitochondrial matrix	Hs	cellular component	396	8.91e-141
endoplasmic reticulum	Hs	cellular component	396	8.91e-141
spindle	Hs	cellular component	396	8.91e-141
cytosol	Hs	cellular component	396	8.91e-141
ribosome	Hs	cellular component	396	8.91e-141
polysome	Hs	cellular component	396	8.91e-141
cytoskeleton	Hs	cellular component	396	8.91e-141
plasma membrane	Hs	cellular component	396	8.91e-141
focal adhesion	Hs	cellular component	396	8.91e-141
microtubule binding	Hs	molecular function	396	8.91e-141
transcription factor binding	Hs	molecular function	396	8.91e-141
tubulin binding	Hs	molecular function	396	8.91e-141
small ribosomal subunit	Hs	cellular component	396	8.91e-141
membrane	Hs	cellular component	396	8.91e-141
lyase activity	Hs	molecular function	396	8.91e-141
enzyme binding	Hs	molecular function	396	8.91e-141
kinase binding	Hs	molecular function	396	8.91e-141
protein kinase binding	Hs	molecular function	396	8.91e-141
cytosolic small ribosomal subunit	Hs	cellular component	396	8.91e-141
intracellular ribonucleoprotein complex	Hs	cellular component	396	8.91e-141
Hsp70 protein binding	Hs	molecular function	396	8.91e-141
oxidized purine DNA binding	Hs	molecular function	396	8.91e-141
oxidized pyrimidine DNA binding	Hs	molecular function	396	8.91e-141
ruffle membrane	Hs	cellular component	396	8.91e-141
ubiquitin-like protein conjugating enzyme binding	Hs	molecular function	396	8.91e-141
macromolecular complex binding	Hs	molecular function	396	8.91e-141
protein kinase A binding	Hs	molecular function	396	8.91e-141
iron-sulfur cluster binding	Hs	molecular function	396	8.91e-141
Hsp90 protein binding	Hs	molecular function	396	8.91e-141
extracellular exosome	Hs	cellular component	396	8.91e-141
small ribosomal subunit rRNA binding	Hs	molecular function	396	8.91e-141
NF-kappaB complex	Hs	cellular component	396	8.91e-141
mitotic spindle	Hs	cellular component	396	8.91e-141
supercoiled DNA binding	Hs	molecular function	396	8.91e-141
class I DNA-(apurinic or apyrimidinic site) lyase activity	Hs	molecular function	396	8.91e-141
class III/IV DNA-(apurinic or apyrimidinic site) lyase activity	Hs	molecular function	396	8.91e-141

GO (InterProScan)

4 results

GO Term	Analysis	Type	e-value
RNA binding	SUPERFAMILY	molecular function	1.23E-24
ribosome	Gene3D	cellular component	4.3E-71
translation	Gene3D	biological process	4.3E-71
small ribosomal subunit	TIGRFAM	cellular component	3.8E-70