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GENE CARD

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  1. Gene 'Haaura.CG.MTP2014.S5...'

Gene Card

Best human hits

RBM41; RNPC3; SNRPA

Species

H.aurantium

Unique Gene ID

Haaura.g00005795

Gene Model ID

Haaura.CG.MTP2014.S576.g05795

Location

S576:30340..32875

Transcript Models and Sequences

  Haaura.CG.MTP2014.S576.g05795.01.t

External Database Gene Card

External database links

No result

Collections
WashU Genome Browser

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Genomicus Synteny Browser

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Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term Analysis Definition
RBD_domain_sf SUPERFAMILY RNA-binding domain superfamily
RRM_dom SMART RNA recognition motif domain
RRM_dom ProSiteProfiles RNA recognition motif domain
Nucleotide-bd_a/b_plait_sf Gene3D Nucleotide-binding alpha-beta plait domain superfamily
RBM40_RRM1 CDD RBM40, RNA recognition motif 1
RRM_dom Pfam RNA recognition motif domain

GOSlim

No result

GO Term Annotation Origin Type

GO (Orthology)

13 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type
mRNA splicing, via spliceosome Hs biological process
nucleic acid binding Hs molecular function
RNA binding Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
spliceosomal complex Hs cellular component
U12-type spliceosomal complex Hs cellular component
mRNA processing Hs biological process
RNA splicing Hs biological process
U12 snRNA binding Hs molecular function
developmental process Hs biological process
pre-mRNA intronic binding Hs molecular function

GO (Blast)

15 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
nucleic acid binding Hs molecular function 301 3.32e-96
RNA binding Hs molecular function 301 3.32e-96
protein binding Hs molecular function 301 3.32e-96
nucleus Hs cellular component 301 3.32e-96
nucleoplasm Hs cellular component 301 3.32e-96
spliceosomal complex Hs cellular component 301 3.32e-96
U1 snRNP Hs cellular component 52.8 1.77e-07
U12-type spliceosomal complex Hs cellular component 301 3.32e-96
intracellular ribonucleoprotein complex Hs cellular component 52.8 1.77e-07
U1 snRNA binding Hs molecular function 52.8 1.77e-07
U12 snRNA binding Hs molecular function 301 3.32e-96
snRNA stem-loop binding Hs molecular function 52.8 1.77e-07
identical protein binding Hs molecular function 52.8 1.77e-07
pre-mRNA intronic binding Hs molecular function 301 3.32e-96
U1 snRNP binding Hs molecular function 52.8 1.77e-07

GO (InterProScan)

2 results

GO Term Analysis Type e-value
nucleic acid binding SUPERFAMILY molecular function 2.96E-16
protein binding CDD molecular function 3.29602E-28