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GENE CARD

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Gene Card

Best human hits

COL21A1; COL24A1; COL4A1

Species

H.aurantium

Unique Gene ID

Haaura.g00011077

Gene Model ID

Haaura.CG.MTP2014.S6311.g11077

Location

S6311:214..1726

Transcript Models and Sequences

  Haaura.CG.MTP2014.S6311.g11077.01.t

External Database Gene Card

External database links

No result

Collections
WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

7 results

IPR Term Analysis Definition
C1q_dom ProSiteProfiles C1q domain
Collagen Pfam Collagen triple helix repeat
Tumour_necrosis_fac-like_dom SUPERFAMILY Tumour necrosis factor-like domain superfamily
C1q_dom PRINTS C1q domain
Tumour_necrosis_fac-like_dom Gene3D Tumour necrosis factor-like domain superfamily
C1q_dom Pfam C1q domain
C1q_dom SMART C1q domain

GOSlim

No result

GO Term Annotation Origin Type

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type

GO (Blast)

14 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
extracellular matrix structural constituent Hs molecular function 110 3.48e-25
protein binding Hs molecular function 110 3.48e-25
extracellular region Hs cellular component 110 3.48e-25
proteinaceous extracellular matrix Hs cellular component 110 3.48e-25
collagen trimer Hs cellular component 110 3.48e-25
collagen type IV trimer Hs cellular component 100 3.22e-22
basement membrane Hs cellular component 100 3.22e-22
extracellular space Hs cellular component 100 3.22e-22
cytoplasm Hs cellular component 103 3.13e-23
endoplasmic reticulum lumen Hs cellular component 110 3.48e-25
cytosol Hs cellular component 103 3.13e-23
extracellular matrix constituent conferring elasticity Hs molecular function 100 3.22e-22
extracellular matrix Hs cellular component 103 3.13e-23
platelet-derived growth factor binding Hs molecular function 100 3.22e-22

GO (InterProScan)

1 result

GO Term Analysis Type e-value
protein binding Gene3D molecular function 6.7E-34