Aniseed - Gene card

Gene 'Boschl.CG.Botznik201...' >
Gene 'Harore.CG.MTP2014.S1...'

Gene Card

Best human hits

CSDE1

Species

H.roretzi

Unique Gene ID

Harore.g00015624

Gene Model ID

Harore.CG.MTP2014.S121.g15624

Location

S121:111026..121674

Transcript Models and Sequences

Harore.CG.MTP2014.S121.g15624.01.t
Harore.CG.MTP2014.S121.g15624.02.t

External Database Gene Card

External database links

No result

Collections

WashU Genome Browser

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Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

5 results

IPR Term	Analysis	Definition
NA-bd_OB-fold	SUPERFAMILY	Nucleic acid-binding, OB-fold
CSD	SMART	Cold shock domain
CSP_DNA-bd	CDD	Cold-shock protein, DNA-binding
CSP_DNA-bd	Pfam	Cold-shock protein, DNA-binding
Cold-shock_CS	ProSitePatterns	Cold-shock conserved site

GOSlim

15 results

GO Term	Annotation Origin	Type
nucleic acid binding	Orthology	molecular function
DNA binding	Orthology	molecular function
RNA binding	Orthology	molecular function
protein binding	Orthology	molecular function
cytoplasm	Orthology	cellular component
mitochondrial inner membrane	Orthology	cellular component
Golgi apparatus	Orthology	cellular component
cytosol	Orthology	cellular component
plasma membrane	Orthology	cellular component
regulation of transcription, DNA-templated	Orthology	biological process
reproductive process	Orthology	biological process
animal organ development	Orthology	biological process
cytoplasmic part	Orthology	cellular component
macromolecular complex	Orthology	cellular component
nuclear-transcribed mRNA catabolic process	Orthology	biological process

GO (Orthology)

13 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
nucleic acid binding	Hs	molecular function
DNA binding	Hs	molecular function
RNA binding	Hs	molecular function
protein binding	Hs	molecular function
cytoplasm	Hs	cellular component
mitochondrial inner membrane	Hs	cellular component
Golgi apparatus	Hs	cellular component
cytosol	Hs	cellular component
plasma membrane	Hs	cellular component
regulation of transcription, DNA-templated	Hs	biological process
male gonad development	Hs	biological process
CRD-mediated mRNA stability complex	Hs	cellular component
nuclear-transcribed mRNA catabolic process, no-go decay	Hs	biological process

GO (Blast)

10 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
nucleic acid binding	Hs	molecular function	362	6.09e-110
DNA binding	Hs	molecular function	362	6.09e-110
RNA binding	Hs	molecular function	362	6.09e-110
protein binding	Hs	molecular function	362	6.09e-110
cytoplasm	Hs	cellular component	362	6.09e-110
mitochondrial inner membrane	Hs	cellular component	362	6.09e-110
Golgi apparatus	Hs	cellular component	362	6.09e-110
cytosol	Hs	cellular component	362	6.09e-110
plasma membrane	Hs	cellular component	362	6.09e-110
CRD-mediated mRNA stability complex	Hs	cellular component	362	6.09e-110

GO (InterProScan)

3 results

GO Term	Analysis	Type	e-value
nucleic acid binding	SMART	molecular function	6.8E-12
DNA binding	Pfam	molecular function	1.1E-13
regulation of transcription, DNA-templated	Pfam	biological process	1.1E-13