Aniseed - Gene card

External Database Gene Card

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WashU Genome Browser

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Genomicus Synteny Browser

Regulatory Regions

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Gene Phylogeny

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Gene Annotations

InterPro

13 results

IPR Term	Analysis	Definition
dsRBD_dom	Pfam	Double-stranded RNA-binding domain
XTBD_dom_prot	PANTHER	XTBD domain-containing protein
G_patch_dom	SMART	G-patch domain
R3H_dom_sf	Gene3D	R3H domain superfamily
G_patch_dom	ProSiteProfiles	G-patch domain
R3H_dom_sf	SUPERFAMILY	R3H domain superfamily
XTBD	Pfam	XRN2-binding (XTBD) domain
R3H_dom	SMART	R3H domain
dsRBD_dom	ProSiteProfiles	Double-stranded RNA-binding domain
XTBD	ProSiteProfiles	XRN2-binding (XTBD) domain
G_patch_dom	Pfam	G-patch domain
R3H_dom	ProSiteProfiles	R3H domain
R3H_dom	Pfam	R3H domain

GOSlim

20 results

GO Term	Annotation Origin	Type
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Orthology	molecular function
nucleic acid binding	Orthology	molecular function
DNA binding	Orthology	molecular function
RNA binding	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
nucleolus	Orthology	cellular component
transcription, DNA-templated	Orthology	biological process
regulation of transcription, DNA-templated	Orthology	biological process
transcription from RNA polymerase II promoter	Orthology	biological process
nuclear speck	Blast	cellular component
identical protein binding	Blast	molecular function
macromolecular complex binding	Blast	molecular function
negative regulation of transcription, DNA-templated	Orthology	biological process
positive regulation of transcription from RNA polymerase II promoter	Orthology	biological process
metal ion binding	Blast	molecular function
signal transduction	Orthology	biological process
nuclear part	Blast	cellular component
macromolecular complex	Blast	cellular component

GO (Orthology)

15 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Hs	molecular function
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding	Hs	molecular function
nucleic acid binding	Hs	molecular function
DNA binding	Hs	molecular function
RNA binding	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
nucleolus	Hs	cellular component
transcription, DNA-templated	Hs	biological process
regulation of transcription, DNA-templated	Hs	biological process
transcription from RNA polymerase II promoter	Hs	biological process
negative regulation of transcription, DNA-templated	Hs	biological process
positive regulation of transcription from RNA polymerase II promoter	Hs	biological process
signal transduction	Hs	biological process

GO (Blast)

16 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Hs	molecular function	139	2.08e-35
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding	Hs	molecular function	139	2.08e-35
nucleic acid binding	Hs	molecular function	139	2.08e-35
DNA binding	Hs	molecular function	139	2.08e-35
RNA binding	Hs	molecular function	139	2.08e-35
mRNA binding	Hs	molecular function	55.5	4.82e-08
protein binding	Hs	molecular function	139	2.08e-35
nucleus	Hs	cellular component	139	2.08e-35
nucleoplasm	Hs	cellular component	55.5	4.82e-08
spliceosomal complex	Hs	cellular component	55.5	4.82e-08
nucleolus	Hs	cellular component	139	2.08e-35
nuclear speck	Hs	cellular component	53.9	1.83e-07
miRNA binding	Hs	molecular function	53.9	1.83e-07
identical protein binding	Hs	molecular function	53.9	1.83e-07
macromolecular complex binding	Hs	molecular function	53.9	1.83e-07
metal ion binding	Hs	molecular function	55.5	4.82e-08

GO (InterProScan)

1 result

GO Term	Analysis	Type	e-value
nucleic acid binding	Pfam	molecular function	1.4E-14

Gene Card

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