Aniseed - Gene card

Gene Card

Best human hits

TPM1; TPM2; TPM3

Species

H.roretzi

Unique Gene ID

Harore.g00007931

Gene Model ID

Harore.CG.MTP2014.S165.g07931

Location

S165:55249..63939

Transcript Models and Sequences

Harore.CG.MTP2014.S165.g07931.01.t
Harore.CG.MTP2014.S165.g07931.02.t
Harore.CG.MTP2014.S165.g07931.03.t
Harore.CG.MTP2014.S165.g07931.04.t
Harore.CG.MTP2014.S165.g07931.05.t
Harore.CG.MTP2014.S165.g07931.06.t
Harore.CG.MTP2014.S165.g07931.07.t
Harore.CG.MTP2014.S165.g07931.08.t

External Database Gene Card

External database links

No result

Collections

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

2 results

IPR Term	Analysis	Definition
Tropomyosin	Pfam	Tropomyosin
Tropomyosin	PRINTS	Tropomyosin

GOSlim

24 results

GO Term	Annotation Origin	Type
actin binding	Blast	molecular function
protein binding	Blast	molecular function
cytoplasm	Blast	cellular component
cytosol	Blast	cellular component
cytoskeleton	Blast	cellular component
cytoskeletal protein binding	Blast	molecular function
membrane	Blast	cellular component
integral component of membrane	Blast	cellular component
identical protein binding	Blast	molecular function
protein homodimerization activity	Blast	molecular function
protein heterodimerization activity	Blast	molecular function
actin filament binding	Blast	molecular function
extracellular exosome	Blast	cellular component
cytoskeletal part	Blast	cellular component
organelle organization	Blast	biological process
structural molecule activity	Blast	molecular function
cytoplasmic part	Blast	cellular component
intracellular non-membrane-bounded organelle	Blast	cellular component
organelle part	Blast	cellular component
macromolecular complex	Blast	cellular component
cell projection	Blast	cellular component
plasma membrane region	Blast	cellular component
cell projection membrane	Blast	cellular component
cell leading edge	Blast	cellular component

GO (Orthology)

No result

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type

GO (Blast)

24 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
stress fiber	Hs	cellular component	60.5	2.38e-10
actin binding	Hs	molecular function	60.5	2.31e-10
structural constituent of cytoskeleton	Hs	molecular function	60.5	2.38e-10
protein binding	Hs	molecular function	60.5	2.38e-10
cytoplasm	Hs	cellular component	60.5	2.31e-10
cytosol	Hs	cellular component	60.5	2.31e-10
cytoskeleton	Hs	cellular component	60.5	2.31e-10
muscle thin filament tropomyosin	Hs	cellular component	60.5	2.31e-10
actin filament	Hs	cellular component	60.5	2.31e-10
cytoskeletal protein binding	Hs	molecular function	60.5	2.38e-10
structural constituent of muscle	Hs	molecular function	60.5	2.31e-10
actin cytoskeleton	Hs	cellular component	60.5	2.31e-10
membrane	Hs	cellular component	60.5	2.38e-10
integral component of membrane	Hs	cellular component	60.5	2.38e-10
myofibril	Hs	cellular component	60.5	2.38e-10
sarcomere	Hs	cellular component	60.5	2.38e-10
filamentous actin	Hs	cellular component	60.5	2.38e-10
bleb	Hs	cellular component	60.5	2.38e-10
ruffle membrane	Hs	cellular component	60.5	2.38e-10
identical protein binding	Hs	molecular function	60.5	2.31e-10
protein homodimerization activity	Hs	molecular function	60.5	2.31e-10
protein heterodimerization activity	Hs	molecular function	60.5	2.31e-10
actin filament binding	Hs	molecular function	60.5	2.31e-10
extracellular exosome	Hs	cellular component	53.1	5.62e-08

GO (InterProScan)

No result

GO Term	Analysis	Type	e-value