Aniseed - Gene card

External Database Gene Card

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WashU Genome Browser

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Genomicus Synteny Browser

Regulatory Regions

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Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term	Analysis	Definition
Nucleotide-bd_a/b_plait_sf	Gene3D	Nucleotide-binding alpha-beta plait domain superfamily
RRM_dom	ProSiteProfiles	RNA recognition motif domain
RRM_dom	SMART	RNA recognition motif domain
U2AF_lg	TIGRFAM	U2 snRNP auxilliary factor, large subunit, splicing factor
RBD_domain_sf	SUPERFAMILY	RNA-binding domain superfamily
RRM_dom	Pfam	RNA recognition motif domain

GOSlim

24 results

GO Term	Annotation Origin	Type
mRNA splicing, via spliceosome	Orthology	biological process
nucleic acid binding	Orthology	molecular function
DNA binding	Blast	molecular function
RNA binding	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
mRNA processing	Orthology	biological process
RNA splicing	Orthology	biological process
nuclear speck	Orthology	cellular component
enzyme binding	Orthology	molecular function
cell junction	Blast	cellular component
identical protein binding	Blast	molecular function
nuclear part	Orthology	cellular component
macromolecular complex	Orthology	cellular component
transcription from RNA polymerase II promoter	Orthology	biological process
organic substance transport	Orthology	biological process
intracellular transport	Orthology	biological process
intracellular protein transport	Orthology	biological process
gene expression	Orthology	biological process
protein ubiquitination	Orthology	biological process
positive regulation of gene expression	Orthology	biological process
negative regulation of gene expression	Orthology	biological process
cell adhesion molecule binding	Blast	molecular function

GO (Orthology)

25 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
commitment complex	Hs	cellular component
mRNA splicing, via spliceosome	Hs	biological process
Prp19 complex	Hs	cellular component
nucleic acid binding	Hs	molecular function
RNA binding	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
spliceosomal complex	Hs	cellular component
termination of RNA polymerase II transcription	Hs	biological process
mRNA processing	Hs	biological process
RNA export from nucleus	Hs	biological process
mRNA export from nucleus	Hs	biological process
poly-pyrimidine tract binding	Hs	molecular function
RNA splicing	Hs	biological process
nuclear speck	Hs	cellular component
enzyme binding	Hs	molecular function
pre-mRNA 3'-splice site binding	Hs	molecular function
mRNA 3'-end processing	Hs	biological process
negative regulation of protein ubiquitination	Hs	biological process
positive regulation of RNA splicing	Hs	biological process
negative regulation of mRNA splicing, via spliceosome	Hs	biological process
C2H2 zinc finger domain binding	Hs	molecular function
U2-type prespliceosome	Hs	cellular component
U2AF	Hs	cellular component

GO (Blast)

21 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
commitment complex	Hs	cellular component	552	0.0
Prp19 complex	Hs	cellular component	552	0.0
nucleic acid binding	Hs	molecular function	552	0.0
DNA binding	Hs	molecular function	68.9	2.63e-12
RNA binding	Hs	molecular function	552	0.0
protein binding	Hs	molecular function	552	0.0
nucleus	Hs	cellular component	552	0.0
nucleoplasm	Hs	cellular component	552	0.0
spliceosomal complex	Hs	cellular component	552	0.0
poly-pyrimidine tract binding	Hs	molecular function	552	0.0
nuclear speck	Hs	cellular component	552	0.0
enzyme binding	Hs	molecular function	552	0.0
cyclin-dependent protein kinase activating kinase holoenzyme complex	Hs	cellular component	68.9	2.63e-12
cell junction	Hs	cellular component	68.9	2.63e-12
intracellular ribonucleoprotein complex	Hs	cellular component	68.9	2.63e-12
pre-mRNA 3'-splice site binding	Hs	molecular function	552	0.0
identical protein binding	Hs	molecular function	68.9	2.63e-12
cadherin binding	Hs	molecular function	68.9	2.63e-12
C2H2 zinc finger domain binding	Hs	molecular function	552	0.0
U2-type prespliceosome	Hs	cellular component	552	0.0
U2AF	Hs	cellular component	552	0.0

GO (InterProScan)

4 results

GO Term	Analysis	Type	e-value
nucleic acid binding	SUPERFAMILY	molecular function	1.29E-27
RNA binding	TIGRFAM	molecular function	7.7E-148
nucleus	TIGRFAM	cellular component	7.7E-148
mRNA processing	TIGRFAM	biological process	7.7E-148

Gene Card

Best human hits

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