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GENE CARD

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Gene Card

Best human hits

COL12A1; MATN2; SELE

Species

H.roretzi

Unique Gene ID

Harore.g00003041

Gene Model ID

Harore.CG.MTP2014.S19.g03041

Location

S19:40581..49822

Transcript Models and Sequences

  Harore.CG.MTP2014.S19.g03041.01.t

External Database Gene Card

External database links

No result

Collections
WashU Genome Browser

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Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

23 results

IPR Term Analysis Definition
EGF-like_dom Pfam EGF-like domain
vWFA_dom_sf SUPERFAMILY von Willebrand factor A-like domain superfamily
FN3_dom CDD Fibronectin type III
Sushi_SCR_CCP_dom CDD Sushi/SCR/CCP domain
Sushi_SCR_CCP_dom ProSiteProfiles Sushi/SCR/CCP domain
EGF-like_dom ProSiteProfiles EGF-like domain
VWF_A SMART von Willebrand factor, type A
FN3_dom SMART Fibronectin type III
Sushi/SCR/CCP_sf SUPERFAMILY Sushi/SCR/CCP superfamily
EGF_Ca-bd_CS ProSitePatterns EGF-like calcium-binding, conserved site
vWFA_dom_sf Gene3D von Willebrand factor A-like domain superfamily
FN3_dom ProSiteProfiles Fibronectin type III
CD59_antigen_CS ProSitePatterns CD59 antigen, conserved site
EGF-like_dom SMART EGF-like domain
VWF_A ProSiteProfiles von Willebrand factor, type A
FN3_sf SUPERFAMILY Fibronectin type III superfamily
Sushi_SCR_CCP_dom SMART Sushi/SCR/CCP domain
EGF-like_Ca-bd_dom SMART EGF-like calcium-binding domain
EGF-type_Asp/Asn_hydroxyl_site ProSitePatterns EGF-type aspartate/asparagine hydroxylation site
Sushi_SCR_CCP_dom Pfam Sushi/SCR/CCP domain
EGF-like_CS ProSitePatterns EGF-like, conserved site
VWF_A Pfam von Willebrand factor, type A
Ig-like_fold Gene3D Immunoglobulin-like fold

GOSlim

29 results

GO Term Annotation Origin Type
transmembrane signaling receptor activity Blast molecular function
calcium ion binding Blast molecular function
protein binding Blast molecular function
extracellular region Blast cellular component
extracellular space Blast cellular component
endoplasmic reticulum lumen Blast cellular component
plasma membrane Blast cellular component
integral component of plasma membrane Blast cellular component
membrane Blast cellular component
integral component of membrane Blast cellular component
membrane raft Blast cellular component
metal ion binding Blast molecular function
perinuclear region of cytoplasm Blast cellular component
extracellular exosome Blast cellular component
extracellular vesicle Blast cellular component
macromolecular complex Blast cellular component
extracellular region part Blast cellular component
plasma membrane region Blast cellular component
membrane part Blast cellular component
endomembrane system Blast cellular component
structural molecule activity Blast molecular function
binding Blast molecular function
cytoplasmic part Blast cellular component
cell periphery Blast cellular component
cytoskeleton Blast cellular component
small molecule binding Blast molecular function
anion binding Blast molecular function
carbohydrate derivative binding Blast molecular function
enzyme binding Blast molecular function

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type

GO (Blast)

28 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
transmembrane signaling receptor activity Hs molecular function 110 7.72e-25
calcium ion binding Hs molecular function 101 9.49e-22
protein binding Hs molecular function 112 1.01e-24
extracellular region Hs cellular component 112 1.01e-24
proteinaceous extracellular matrix Hs cellular component 112 1.01e-24
collagen trimer Hs cellular component 112 1.01e-24
collagen type XII trimer Hs cellular component 112 1.01e-24
basement membrane Hs cellular component 101 9.49e-22
extracellular space Hs cellular component 112 1.01e-24
endoplasmic reticulum lumen Hs cellular component 112 1.01e-24
plasma membrane Hs cellular component 110 7.72e-25
integral component of plasma membrane Hs cellular component 110 7.72e-25
caveola Hs cellular component 110 7.72e-25
clathrin-coated pit Hs cellular component 110 7.72e-25
membrane Hs cellular component 110 7.72e-25
integral component of membrane Hs cellular component 110 7.72e-25
extracellular matrix structural constituent conferring tensile strength Hs molecular function 112 1.01e-24
carbohydrate binding Hs molecular function 110 7.72e-25
cortical cytoskeleton Hs cellular component 110 7.72e-25
extracellular matrix Hs cellular component 112 1.01e-24
sialic acid binding Hs molecular function 110 7.72e-25
phospholipase binding Hs molecular function 110 7.72e-25
membrane raft Hs cellular component 110 7.72e-25
metal ion binding Hs molecular function 110 7.72e-25
perinuclear region of cytoplasm Hs cellular component 110 7.72e-25
extracellular exosome Hs cellular component 112 1.01e-24
oligosaccharide binding Hs molecular function 110 7.72e-25
extracellular vesicle Hs cellular component 112 1.01e-24

GO (InterProScan)

2 results

GO Term Analysis Type e-value
calcium ion binding SMART molecular function 2.9E-8
protein binding SUPERFAMILY molecular function 1.96E-10

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