Aniseed - Gene card

EST 'AV877118' >

Gene Card

Best human hits

RARA; RARB; RARG

Species

H.roretzi

Unique Gene ID

Harore.g00003857

Gene Model ID

Harore.CG.MTP2014.S237.g03857

Location

S237:58475..65783

Transcript Models and Sequences

Harore.CG.MTP2014.S237.g03857.01.t
Harore.CG.MTP2014.S237.g03857.02.t
Harore.CG.MTP2014.S237.g03857.03.t

External Database Gene Card

External database links

No result

Collections

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

11 results

IPR Term	Analysis	Definition
Nucl_hrmn_rcpt_lig-bd	Pfam	Nuclear hormone receptor, ligand-binding domain
Retinoic_acid_rcpt	PRINTS	Retinoic acid receptor
Znf_hrmn_rcpt	ProSitePatterns	Zinc finger, nuclear hormone receptor-type
Nucl_hrmn_rcpt_lig-bd	SMART	Nuclear hormone receptor, ligand-binding domain
Znf_hrmn_rcpt	ProSiteProfiles	Zinc finger, nuclear hormone receptor-type
Nuclear_hrmn_rcpt	PRINTS	Nuclear hormone receptor
NHR_like_dom_sf	SUPERFAMILY	Nuclear hormone receptor-like domain superfamily
Znf_hrmn_rcpt	SMART	Zinc finger, nuclear hormone receptor-type
Znf_NHR/GATA	Gene3D	Zinc finger, NHR/GATA-type
Znf_hrmn_rcpt	PRINTS	Zinc finger, nuclear hormone receptor-type
Znf_hrmn_rcpt	Pfam	Zinc finger, nuclear hormone receptor-type

GOSlim

88 results

GO Term	Annotation Origin	Type
negative regulation of transcription from RNA polymerase II promoter	Orthology	biological process
RNA polymerase II regulatory region sequence-specific DNA binding	Orthology	molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Orthology	molecular function
RNA polymerase II regulatory region DNA binding	Orthology	molecular function
DNA binding	Orthology	molecular function
transcription factor activity, sequence-specific DNA binding	Orthology	molecular function
transcription coactivator activity	Orthology	molecular function
transcription corepressor activity	Orthology	molecular function
receptor binding	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
cytoplasm	Orthology	cellular component
cytosol	Orthology	cellular component
transcription, DNA-templated	Orthology	biological process
regulation of transcription, DNA-templated	Orthology	biological process
transcription initiation from RNA polymerase II promoter	Orthology	biological process
protein phosphorylation	Orthology	biological process
signal transduction	Orthology	biological process
spermatogenesis	Orthology	biological process
transcription factor binding	Orthology	molecular function
zinc ion binding	Orthology	molecular function
positive regulation of cell proliferation	Orthology	biological process
negative regulation of cell proliferation	Orthology	biological process
cell surface	Orthology	cellular component
regulation of gene expression	Orthology	biological process
positive regulation of gene expression	Orthology	biological process
negative regulation of gene expression	Orthology	biological process
integral component of membrane	Orthology	cellular component
enzyme binding	Orthology	molecular function
neurogenesis	Orthology	biological process
response to cytokine	Orthology	biological process
regulation of apoptotic process	Orthology	biological process
neuron projection	Orthology	cellular component
neuronal cell body	Orthology	cellular component
positive regulation of apoptotic process	Orthology	biological process
negative regulation of apoptotic process	Orthology	biological process
positive regulation of programmed cell death	Orthology	biological process
sequence-specific DNA binding	Orthology	molecular function
transcription regulatory region DNA binding	Orthology	molecular function
negative regulation of transcription, DNA-templated	Orthology	biological process
positive regulation of transcription, DNA-templated	Orthology	biological process
positive regulation of transcription from RNA polymerase II promoter	Orthology	biological process
metal ion binding	Orthology	molecular function
protein heterodimerization activity	Orthology	molecular function
perinuclear region of cytoplasm	Orthology	cellular component
intracellular non-membrane-bounded organelle	Orthology	cellular component
nuclear lumen	Orthology	cellular component
nucleic acid binding	Orthology	molecular function
animal organ development	Orthology	biological process
anatomical structure formation involved in morphogenesis	Orthology	biological process
nervous system development	Orthology	biological process
small molecule binding	Orthology	molecular function
anion binding	Orthology	molecular function
cell development	Orthology	biological process
response to lipid	Orthology	biological process
signaling receptor activity	Orthology	molecular function
cellular response to organic substance	Orthology	biological process
intracellular part	Orthology	cellular component
macromolecular complex	Orthology	cellular component
gamete generation	Orthology	biological process
binding	Orthology	molecular function
cellular component organization	Orthology	biological process
reproductive process	Orthology	biological process
multicellular organism development	Orthology	biological process
cytoskeleton	Orthology	cellular component
chromatin binding	Orthology	molecular function
anatomical structure morphogenesis	Orthology	biological process
developmental process	Orthology	biological process
protein kinase binding	Orthology	molecular function
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Orthology	molecular function
response to organic substance	Orthology	biological process
cell differentiation	Orthology	biological process
immune system process	Orthology	biological process
neuron differentiation	Orthology	biological process
cell cycle	Orthology	biological process
translational initiation	Orthology	biological process
RNA binding	Orthology	molecular function
chemical synaptic transmission	Orthology	biological process
regulation of signaling	Orthology	biological process
system development	Orthology	biological process
cytoskeletal protein binding	Orthology	molecular function
heart development	Orthology	biological process
cell surface receptor signaling pathway	Orthology	biological process
cell-cell signaling	Orthology	biological process
head development	Orthology	biological process
anatomical structure development	Orthology	biological process
response to lipopolysaccharide	Orthology	biological process

GO (Orthology)

106 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
negative regulation of transcription from RNA polymerase II promoter	Hs	biological process
nuclear chromatin	Hs	cellular component
translation repressor activity, nucleic acid binding	Hs	molecular function
RNA polymerase II regulatory region sequence-specific DNA binding	Hs	molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function
RNA polymerase II regulatory region DNA binding	Hs	molecular function
ureteric bud development	Hs	biological process
neural tube closure	Hs	biological process
liver development	Hs	biological process
retinoic acid binding	Hs	molecular function
chondrocyte development	Hs	biological process
retinal pigment epithelium development	Hs	biological process
DNA binding	Hs	molecular function
transcription factor activity, sequence-specific DNA binding	Hs	molecular function
steroid hormone receptor activity	Hs	molecular function
retinoic acid receptor activity	Hs	molecular function
transcription coactivator activity	Hs	molecular function
transcription corepressor activity	Hs	molecular function
nuclear receptor activity	Hs	molecular function
receptor binding	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
transcription factor complex	Hs	cellular component
cytoplasm	Hs	cellular component
cytosol	Hs	cellular component
transcription, DNA-templated	Hs	biological process
regulation of transcription, DNA-templated	Hs	biological process
transcription initiation from RNA polymerase II promoter	Hs	biological process
protein phosphorylation	Hs	biological process
signal transduction	Hs	biological process
germ cell development	Hs	biological process
spermatogenesis	Hs	biological process
transcription factor binding	Hs	molecular function
drug binding	Hs	molecular function
zinc ion binding	Hs	molecular function
positive regulation of cell proliferation	Hs	biological process
negative regulation of cell proliferation	Hs	biological process
regulation of cell size	Hs	biological process
male gonad development	Hs	biological process
anterior/posterior pattern specification	Hs	biological process
cell surface	Hs	cellular component
regulation of gene expression	Hs	biological process
positive regulation of gene expression	Hs	biological process
negative regulation of gene expression	Hs	biological process
actin cytoskeleton	Hs	cellular component
integral component of membrane	Hs	cellular component
negative regulation of translation	Hs	biological process
enzyme binding	Hs	molecular function
protein domain specific binding	Hs	molecular function
neurogenesis	Hs	biological process
dendrite	Hs	cellular component
embryonic camera-type eye development	Hs	biological process
chromatin DNA binding	Hs	molecular function
regulation of myelination	Hs	biological process
response to estradiol	Hs	biological process
response to retinoic acid	Hs	biological process
response to cytokine	Hs	biological process
embryonic hindlimb morphogenesis	Hs	biological process
multicellular organism growth	Hs	biological process
histone deacetylase binding	Hs	molecular function
regulation of apoptotic process	Hs	biological process
neuron projection	Hs	cellular component
camera-type eye development	Hs	biological process
neuronal cell body	Hs	cellular component
positive regulation of apoptotic process	Hs	biological process
negative regulation of apoptotic process	Hs	biological process
positive regulation of programmed cell death	Hs	biological process
apoptotic cell clearance	Hs	biological process
steroid hormone mediated signaling pathway	Hs	biological process
protein kinase B binding	Hs	molecular function
sequence-specific DNA binding	Hs	molecular function
transcription regulatory region DNA binding	Hs	molecular function
retinoic acid-responsive element binding	Hs	molecular function
response to ethanol	Hs	biological process
negative regulation of cell differentiation	Hs	biological process
regulation of myeloid cell differentiation	Hs	biological process
positive regulation of neuron differentiation	Hs	biological process
positive regulation of cell cycle	Hs	biological process
negative regulation of transcription, DNA-templated	Hs	biological process
positive regulation of transcription, DNA-templated	Hs	biological process
positive regulation of transcription from RNA polymerase II promoter	Hs	biological process
negative regulation of translational initiation	Hs	biological process
metal ion binding	Hs	molecular function
retinoid X receptor binding	Hs	molecular function
protein heterodimerization activity	Hs	molecular function
mRNA 5'-UTR binding	Hs	molecular function
embryonic eye morphogenesis	Hs	biological process
regulation of synaptic plasticity	Hs	biological process
retinoic acid receptor signaling pathway	Hs	biological process
perinuclear region of cytoplasm	Hs	cellular component
embryonic digestive tract development	Hs	biological process
reproductive structure development	Hs	biological process
protein kinase A binding	Hs	molecular function
alpha-actinin binding	Hs	molecular function
ventricular cardiac muscle cell differentiation	Hs	biological process
retina development in camera-type eye	Hs	biological process
canonical Wnt signaling pathway	Hs	biological process
limb development	Hs	biological process
face development	Hs	biological process
bone development	Hs	biological process
bone morphogenesis	Hs	biological process
epithelium development	Hs	biological process
cellular response to lipopolysaccharide	Hs	biological process
cellular response to retinoic acid	Hs	biological process
cellular response to estrogen stimulus	Hs	biological process

GO (Blast)

44 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
nuclear chromatin	Hs	cellular component	439	7.53e-151
translation repressor activity, nucleic acid binding	Hs	molecular function	439	7.53e-151
RNA polymerase II regulatory region sequence-specific DNA binding	Hs	molecular function	453	9.89e-157
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function	453	9.89e-157
RNA polymerase II regulatory region DNA binding	Hs	molecular function	439	7.53e-151
retinoic acid binding	Hs	molecular function	439	7.53e-151
DNA binding	Hs	molecular function	453	9.89e-157
transcription factor activity, sequence-specific DNA binding	Hs	molecular function	453	9.89e-157
steroid hormone receptor activity	Hs	molecular function	453	9.89e-157
retinoic acid receptor activity	Hs	molecular function	453	9.89e-157
transcription coactivator activity	Hs	molecular function	439	7.53e-151
transcription corepressor activity	Hs	molecular function	439	7.53e-151
nuclear receptor activity	Hs	molecular function	439	7.53e-151
receptor binding	Hs	molecular function	439	7.53e-151
protein binding	Hs	molecular function	439	7.53e-151
nucleus	Hs	cellular component	453	9.89e-157
nucleoplasm	Hs	cellular component	453	9.89e-157
transcription factor complex	Hs	cellular component	427	1.27e-146
cytoplasm	Hs	cellular component	453	9.89e-157
cytosol	Hs	cellular component	439	7.53e-151
transcription factor binding	Hs	molecular function	439	7.53e-151
drug binding	Hs	molecular function	453	9.89e-157
zinc ion binding	Hs	molecular function	453	9.89e-157
cell surface	Hs	cellular component	439	7.53e-151
actin cytoskeleton	Hs	cellular component	439	7.53e-151
integral component of membrane	Hs	cellular component	427	1.27e-146
enzyme binding	Hs	molecular function	439	7.53e-151
protein domain specific binding	Hs	molecular function	439	7.53e-151
dendrite	Hs	cellular component	439	7.53e-151
chromatin DNA binding	Hs	molecular function	439	7.53e-151
histone deacetylase binding	Hs	molecular function	439	7.53e-151
neuron projection	Hs	cellular component	439	7.53e-151
neuronal cell body	Hs	cellular component	439	7.53e-151
protein kinase B binding	Hs	molecular function	439	7.53e-151
sequence-specific DNA binding	Hs	molecular function	453	9.89e-157
transcription regulatory region DNA binding	Hs	molecular function	439	7.53e-151
retinoic acid-responsive element binding	Hs	molecular function	439	7.53e-151
metal ion binding	Hs	molecular function	453	9.89e-157
retinoid X receptor binding	Hs	molecular function	453	9.89e-157
protein heterodimerization activity	Hs	molecular function	439	7.53e-151
mRNA 5'-UTR binding	Hs	molecular function	439	7.53e-151
perinuclear region of cytoplasm	Hs	cellular component	439	7.53e-151
protein kinase A binding	Hs	molecular function	439	7.53e-151
alpha-actinin binding	Hs	molecular function	439	7.53e-151

GO (InterProScan)

10 results

GO Term	Analysis	Type	e-value
DNA binding	PRINTS	molecular function	3.1E-28
transcription factor activity, sequence-specific DNA binding	SMART	molecular function	1.3E-39
steroid hormone receptor activity	PRINTS	molecular function	5.1E-28
retinoic acid receptor activity	PRINTS	molecular function	3.1E-28
nucleus	SMART	cellular component	1.3E-39
regulation of transcription, DNA-templated	SMART	biological process	1.3E-39
zinc ion binding	SMART	molecular function	1.3E-39
steroid hormone mediated signaling pathway	SMART	biological process	3.7E-33
sequence-specific DNA binding	SMART	molecular function	1.3E-39
retinoic acid receptor signaling pathway	PRINTS	biological process	3.1E-28