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Gene Card

Best human hits

ATRX; RAD54L; RAD54L2

Species

H.roretzi

Unique Gene ID

Harore.g00012910

Gene Model ID

Harore.CG.MTP2014.S28.g12910

Location

S28:157741..179008

Transcript Models and Sequences

  Harore.CG.MTP2014.S28.g12910.01.t

External Database Gene Card

External database links

No result

Collections
WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

13 results

IPR Term Analysis Definition
Helicase_C CDD Helicase, C-terminal
Znf_RING_CS ProSitePatterns Zinc finger, RING-type, conserved site
ADD ProSiteProfiles ADD domain
Znf_FYVE_PHD SUPERFAMILY Zinc finger, FYVE/PHD-type
P-loop_NTPase SUPERFAMILY P-loop containing nucleoside triphosphate hydrolase
Helicase_C ProSiteProfiles Helicase, C-terminal
Helicase_ATP-bd ProSiteProfiles Helicase superfamily 1/2, ATP-binding domain
SNF2_N Pfam SNF2-related, N-terminal domain
SNF2-like_sf Gene3D SNF2-like, N-terminal domain superfamily
Helicase_C SMART Helicase, C-terminal
Helicase_C Pfam Helicase, C-terminal
Znf_RING/FYVE/PHD Gene3D Zinc finger, RING/FYVE/PHD-type
Helicase_ATP-bd SMART Helicase superfamily 1/2, ATP-binding domain

GOSlim

18 results

GO Term Annotation Origin Type
nucleotide binding Blast molecular function
DNA binding Blast molecular function
chromatin binding Blast molecular function
protein binding Blast molecular function
ATP binding Blast molecular function
nucleus Blast cellular component
nucleoplasm Blast cellular component
nuclear body Blast cellular component
hydrolase activity Blast molecular function
macromolecular complex Blast cellular component
metal ion binding Blast molecular function
intracellular non-membrane-bounded organelle Blast cellular component
nuclear lumen Blast cellular component
intracellular organelle part Blast cellular component
organelle organization Blast biological process
nucleoside-triphosphatase activity Blast molecular function
DNA metabolic process Blast biological process
nucleic acid binding Blast molecular function

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type

GO (Blast)

31 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
nucleotide binding Hs molecular function 383 2.25e-107
nuclear chromosome Hs cellular component 383 2.25e-107
condensed nuclear chromosome, centromeric region Hs cellular component 383 2.25e-107
chromosome, telomeric region Hs cellular component 383 2.25e-107
nuclear chromosome, telomeric region Hs cellular component 383 2.25e-107
heterochromatin Hs cellular component 383 2.25e-107
DNA binding Hs molecular function 383 2.25e-107
DNA helicase activity Hs molecular function 383 2.25e-107
chromatin binding Hs molecular function 383 2.25e-107
helicase activity Hs molecular function 383 2.25e-107
protein binding Hs molecular function 383 2.25e-107
ATP binding Hs molecular function 383 2.25e-107
nucleus Hs cellular component 383 2.25e-107
nucleoplasm Hs cellular component 383 2.25e-107
chromosome Hs cellular component 383 2.25e-107
nuclear heterochromatin Hs cellular component 383 2.25e-107
pericentric heterochromatin Hs cellular component 383 2.25e-107
DNA translocase activity Hs molecular function 383 2.25e-107
nuclear body Hs cellular component 383 2.25e-107
PML body Hs cellular component 383 2.25e-107
hydrolase activity Hs molecular function 383 2.25e-107
nuclear pericentric heterochromatin Hs cellular component 383 2.25e-107
telomeric heterochromatin Hs cellular component 383 2.25e-107
macromolecular complex Hs cellular component 144 6.29e-35
methylated histone binding Hs molecular function 383 2.25e-107
annealing helicase activity Hs molecular function 144 6.29e-35
histone binding Hs molecular function 383 2.25e-107
metal ion binding Hs molecular function 383 2.25e-107
chromo shadow domain binding Hs molecular function 383 2.25e-107
SWI/SNF superfamily-type complex Hs cellular component 383 2.25e-107
nuclear subtelomeric heterochromatin Hs cellular component 383 2.25e-107

GO (InterProScan)

1 result

GO Term Analysis Type e-value
ATP binding Pfam molecular function 4.6E-40

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