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Gene Card

Best human hits

HMGB1; HMGB2; HMGB3

Species

H.roretzi

Unique Gene ID

Harore.g00014044

Gene Model ID

Harore.CG.MTP2014.S35.g14044

Location

S35:283736..285376

Transcript Models and Sequences

  Harore.CG.MTP2014.S35.g14044.01.t
Harore.CG.MTP2014.S35.g14044.02.t

External Database Gene Card

External database links

No result

Collections
WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

5 results

IPR Term Analysis Definition
HMG_box_dom SMART High mobility group box domain
HMG_box_dom_sf SUPERFAMILY High mobility group box domain superfamily
HMG_box_dom Pfam High mobility group box domain
HMG_box_dom_sf Gene3D High mobility group box domain superfamily
HMG_box_dom ProSiteProfiles High mobility group box domain

GOSlim

48 results

GO Term Annotation Origin Type
DNA binding Blast molecular function
double-stranded DNA binding Blast molecular function
transcription factor activity, sequence-specific DNA binding Blast molecular function
RNA binding Blast molecular function
integrin binding Blast molecular function
protein binding Blast molecular function
extracellular region Blast cellular component
extracellular space Blast cellular component
cell Blast cellular component
nucleus Blast cellular component
nucleoplasm Blast cellular component
nucleolus Blast cellular component
cytoplasm Blast cellular component
endosome Blast cellular component
early endosome Blast cellular component
plasma membrane Blast cellular component
chemotaxis Blast biological process
transcription factor binding Blast molecular function
cell surface Blast cellular component
membrane Blast cellular component
macromolecular complex Blast cellular component
neuron projection Blast cellular component
transcription regulatory region DNA binding Blast molecular function
perinuclear region of cytoplasm Blast cellular component
intracellular non-membrane-bounded organelle Blast cellular component
nuclear lumen Blast cellular component
transcription regulatory region sequence-specific DNA binding Blast molecular function
carbohydrate derivative binding Blast molecular function
anion binding Blast molecular function
receptor binding Blast molecular function
molecular function regulator Blast molecular function
regulation of signal transduction Blast biological process
signaling receptor activity Blast molecular function
cytoplasmic part Blast cellular component
intracellular membrane-bounded organelle Blast cellular component
binding Blast molecular function
protein kinase binding Blast molecular function
protein kinase activity Blast molecular function
regulation of cellular metabolic process Blast biological process
enzyme regulator activity Blast molecular function
catalytic activity Blast molecular function
enzyme activator activity Blast molecular function
intracellular organelle part Blast cellular component
cytoplasmic vesicle Blast cellular component
endomembrane system Blast cellular component
intracellular organelle lumen Blast cellular component
plasma membrane part Blast cellular component
enzyme binding Blast molecular function

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type

GO (Blast)

54 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
four-way junction DNA binding Hs molecular function 192 2.84e-62
bubble DNA binding Hs molecular function 192 2.84e-62
nuclear chromatin Hs cellular component 191 7.98e-62
condensed chromosome Hs cellular component 192 2.84e-62
enhancer sequence-specific DNA binding Hs molecular function 191 7.98e-62
lipopolysaccharide binding Hs molecular function 192 2.84e-62
phosphatidylserine binding Hs molecular function 192 2.84e-62
DNA binding Hs molecular function 192 2.84e-62
damaged DNA binding Hs molecular function 192 2.84e-62
double-stranded DNA binding Hs molecular function 192 2.84e-62
single-stranded DNA binding Hs molecular function 192 2.84e-62
transcription factor activity, sequence-specific DNA binding Hs molecular function 192 2.84e-62
RNA binding Hs molecular function 192 2.84e-62
double-stranded RNA binding Hs molecular function 192 2.84e-62
single-stranded RNA binding Hs molecular function 192 2.84e-62
cytokine activity Hs molecular function 192 2.84e-62
integrin binding Hs molecular function 192 2.84e-62
protein binding Hs molecular function 192 2.84e-62
extracellular region Hs cellular component 192 2.84e-62
extracellular space Hs cellular component 192 2.84e-62
cell Hs cellular component 191 7.98e-62
nucleus Hs cellular component 192 2.84e-62
nucleoplasm Hs cellular component 192 2.84e-62
chromosome Hs cellular component 192 2.84e-62
nucleolus Hs cellular component 191 7.98e-62
cytoplasm Hs cellular component 192 2.84e-62
endosome Hs cellular component 192 2.84e-62
early endosome Hs cellular component 192 2.84e-62
endoplasmic reticulum-Golgi intermediate compartment Hs cellular component 192 2.84e-62
plasma membrane Hs cellular component 192 2.84e-62
transcription factor binding Hs molecular function 192 2.84e-62
drug binding Hs molecular function 191 7.98e-62
DNA binding, bending Hs molecular function 192 2.84e-62
cell surface Hs cellular component 192 2.84e-62
calcium-dependent protein kinase regulator activity Hs molecular function 192 2.84e-62
membrane Hs cellular component 192 2.84e-62
lyase activity Hs molecular function 192 2.84e-62
transcriptional repressor complex Hs cellular component 192 2.84e-62
protein domain specific binding Hs molecular function 191 7.98e-62
C-X-C chemokine binding Hs molecular function 192 2.84e-62
protein kinase activator activity Hs molecular function 192 2.84e-62
macromolecular complex Hs cellular component 191 7.98e-62
secretory granule lumen Hs cellular component 192 2.84e-62
alphav-beta3 integrin-HMGB1 complex Hs cellular component 192 2.84e-62
chemoattractant activity Hs molecular function 192 2.84e-62
neuron projection Hs cellular component 192 2.84e-62
transcription regulatory region DNA binding Hs molecular function 191 7.98e-62
non-sequence-specific DNA binding, bending Hs molecular function 191 7.98e-62
perinuclear region of cytoplasm Hs cellular component 191 7.98e-62
RAGE receptor binding Hs molecular function 192 2.84e-62
DNA polymerase binding Hs molecular function 192 2.84e-62
repressing transcription factor binding Hs molecular function 192 2.84e-62
supercoiled DNA binding Hs molecular function 192 2.84e-62
ficolin-1-rich granule lumen Hs cellular component 192 2.84e-62

GO (InterProScan)

No result

GO Term Analysis Type e-value

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