Gene Card
Best human hits
RBM41; RNPC3; SNRPA
Species
Unique Gene ID
Harore.g00014081
Gene Model ID
Harore.CG.MTP2014.S4.g14081
Location
S4:275474..280163
Transcript Models and Sequences
n/a
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The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.
Click here to see the tree inference method
InterPro
6 results
| IPR Term | Analysis | Definition |
|---|---|---|
| RRM_dom | Pfam | RNA recognition motif domain |
| RRM_dom | ProSiteProfiles | RNA recognition motif domain |
| RBD_domain_sf | SUPERFAMILY | RNA-binding domain superfamily |
| Nucleotide-bd_a/b_plait_sf | Gene3D | Nucleotide-binding alpha-beta plait domain superfamily |
| RRM_dom | SMART | RNA recognition motif domain |
| RBM40_RRM1 | CDD | RBM40, RNA recognition motif 1 |
GOSlim
13 results
| GO Term | Annotation Origin | Type |
|---|---|---|
| mRNA splicing, via spliceosome | Orthology | biological process |
| nucleic acid binding | Orthology | molecular function |
| RNA binding | Orthology | molecular function |
| protein binding | Orthology | molecular function |
| nucleus | Orthology | cellular component |
| nucleoplasm | Orthology | cellular component |
| mRNA processing | Orthology | biological process |
| RNA splicing | Orthology | biological process |
| developmental process | Orthology | biological process |
| identical protein binding | Blast | molecular function |
| nuclear part | Orthology | cellular component |
| macromolecular complex | Orthology | cellular component |
| macromolecular complex binding | Blast | molecular function |
GO (Orthology)
13 results
| GO Term | SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae |
Type |
|---|---|---|
| mRNA splicing, via spliceosome | Hs | biological process |
| nucleic acid binding | Hs | molecular function |
| RNA binding | Hs | molecular function |
| protein binding | Hs | molecular function |
| nucleus | Hs | cellular component |
| nucleoplasm | Hs | cellular component |
| spliceosomal complex | Hs | cellular component |
| U12-type spliceosomal complex | Hs | cellular component |
| mRNA processing | Hs | biological process |
| RNA splicing | Hs | biological process |
| U12 snRNA binding | Hs | molecular function |
| developmental process | Hs | biological process |
| pre-mRNA intronic binding | Hs | molecular function |
GO (Blast)
15 results
| GO Term | SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae |
Type | Score | E-value |
|---|---|---|---|---|
| nucleic acid binding | Hs | molecular function | 306 | 3.44e-98 |
| RNA binding | Hs | molecular function | 306 | 3.44e-98 |
| protein binding | Hs | molecular function | 306 | 3.44e-98 |
| nucleus | Hs | cellular component | 306 | 3.44e-98 |
| nucleoplasm | Hs | cellular component | 306 | 3.44e-98 |
| spliceosomal complex | Hs | cellular component | 306 | 3.44e-98 |
| U1 snRNP | Hs | cellular component | 52.0 | 3.13e-07 |
| U12-type spliceosomal complex | Hs | cellular component | 306 | 3.44e-98 |
| intracellular ribonucleoprotein complex | Hs | cellular component | 52.0 | 3.13e-07 |
| U1 snRNA binding | Hs | molecular function | 52.0 | 3.13e-07 |
| U12 snRNA binding | Hs | molecular function | 306 | 3.44e-98 |
| snRNA stem-loop binding | Hs | molecular function | 52.0 | 3.13e-07 |
| identical protein binding | Hs | molecular function | 52.0 | 3.13e-07 |
| pre-mRNA intronic binding | Hs | molecular function | 306 | 3.44e-98 |
| U1 snRNP binding | Hs | molecular function | 52.0 | 3.13e-07 |
GO (InterProScan)
2 results
| GO Term | Analysis | Type | e-value |
|---|---|---|---|
| nucleic acid binding | SUPERFAMILY | molecular function | 1.75E-16 |
| protein binding | CDD | molecular function | 1.37309E-27 |
