Aniseed - Gene card

Gene Card

Best human hits

TBX2; TBX4; TBX6

Species

H.roretzi

Unique Gene ID

Harore.g00012970

Gene Model ID

Harore.CG.MTP2014.S461.g12970

Location

S461:47117..50342

Transcript Models and Sequences

Harore.CG.MTP2014.S461.g12970.01.t
Harore.CG.MTP2014.S461.g12970.02.t

External Database Gene Card

External database links

No result

Collections

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

9 results

IPR Term	Analysis	Definition
T-box_sf	Gene3D	T-box superfamily
TF_T-box_CS	ProSitePatterns	Transcription factor, T-box, conserved site
TF_T-box	CDD	Transcription factor, T-box
TF_T-box	ProSiteProfiles	Transcription factor, T-box
TF_T-box	SMART	Transcription factor, T-box
TF_T-box	PANTHER	Transcription factor, T-box
TF_T-box	PRINTS	Transcription factor, T-box
p53-like_TF_DNA-bd	SUPERFAMILY	p53-like transcription factor, DNA-binding
TF_T-box	Pfam	Transcription factor, T-box

GOSlim

12 results

GO Term	Annotation Origin	Type
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Blast	molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Blast	molecular function
DNA binding	Blast	molecular function
transcription factor activity, sequence-specific DNA binding	Blast	molecular function
protein binding	Blast	molecular function
nucleus	Blast	cellular component
regulation of transcription, DNA-templated	InterProScan	biological process
sequence-specific DNA binding	Blast	molecular function
RNA polymerase II regulatory region sequence-specific DNA binding	Blast	molecular function
transcription factor binding	Blast	molecular function
intracellular part	Blast	cellular component
macromolecular complex	Blast	cellular component

GO (Orthology)

No result

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type

GO (Blast)

13 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Hs	molecular function	246	2.98e-71
RNA polymerase II distal enhancer sequence-specific DNA binding	Hs	molecular function	237	9.94e-71
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function	246	2.98e-71
transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding	Hs	molecular function	246	2.98e-71
RNA polymerase II transcription factor binding	Hs	molecular function	237	9.94e-71
RNA polymerase II activating transcription factor binding	Hs	molecular function	237	9.94e-71
transcriptional repressor activity, RNA polymerase II transcription factor binding	Hs	molecular function	237	9.94e-71
DNA binding	Hs	molecular function	246	2.98e-71
transcription factor activity, sequence-specific DNA binding	Hs	molecular function	246	2.98e-71
protein binding	Hs	molecular function	246	2.98e-71
nucleus	Hs	cellular component	246	2.98e-71
transcription factor complex	Hs	cellular component	246	2.98e-71
sequence-specific DNA binding	Hs	molecular function	246	2.98e-71

GO (InterProScan)

3 results

GO Term	Analysis	Type	e-value
transcription factor activity, sequence-specific DNA binding	SMART	molecular function	6.2E-122
nucleus	SMART	cellular component	6.2E-122
regulation of transcription, DNA-templated	SMART	biological process	6.2E-122