Aniseed - Gene card

External Database Gene Card

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WashU Genome Browser

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Genomicus Synteny Browser

Regulatory Regions

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Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term	Analysis	Definition
RRM_dom	ProSiteProfiles	RNA recognition motif domain
RRM_dom	SMART	RNA recognition motif domain
RRM_dom	Pfam	RNA recognition motif domain
NOPS	Pfam	NOPS
RBD_domain_sf	SUPERFAMILY	RNA-binding domain superfamily
Nucleotide-bd_a/b_plait_sf	Gene3D	Nucleotide-binding alpha-beta plait domain superfamily

GOSlim

39 results

GO Term	Annotation Origin	Type
negative regulation of transcription from RNA polymerase II promoter	Orthology	biological process
mRNA splicing, via spliceosome	Orthology	biological process
transcription regulatory region sequence-specific DNA binding	Orthology	molecular function
immune system process	Orthology	biological process
nucleic acid binding	Orthology	molecular function
DNA binding	Orthology	molecular function
chromatin binding	Orthology	molecular function
RNA binding	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
nucleolus	Orthology	cellular component
cytoplasm	Orthology	cellular component
DNA repair	Orthology	biological process
transcription, DNA-templated	Orthology	biological process
regulation of transcription, DNA-templated	Orthology	biological process
mRNA processing	Orthology	biological process
cellular response to DNA damage stimulus	Orthology	biological process
RNA splicing	Orthology	biological process
membrane	Orthology	cellular component
nuclear speck	Orthology	cellular component
identical protein binding	Orthology	molecular function
protein homodimerization activity	Orthology	molecular function
transcription regulatory region DNA binding	Orthology	molecular function
innate immune response	Orthology	biological process
negative regulation of transcription, DNA-templated	Orthology	biological process
positive regulation of transcription from RNA polymerase II promoter	Orthology	biological process
intracellular organelle part	Orthology	cellular component
intracellular non-membrane-bounded organelle	Orthology	cellular component
RNA polymerase II regulatory region sequence-specific DNA binding	Orthology	molecular function
DNA metabolic process	Orthology	biological process
nuclear lumen	Orthology	cellular component
nuclear body	Orthology	cellular component
enzyme binding	Orthology	molecular function
organelle organization	Orthology	biological process
cell cycle	Orthology	biological process
cellular protein modification process	Orthology	biological process
nuclear part	Orthology	cellular component
macromolecular complex	Orthology	cellular component

GO (Orthology)

46 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
negative regulation of transcription from RNA polymerase II promoter	Hs	biological process
alternative mRNA splicing, via spliceosome	Hs	biological process
mRNA splicing, via spliceosome	Hs	biological process
double-strand break repair via homologous recombination	Hs	biological process
chromatin	Hs	cellular component
transcription regulatory region sequence-specific DNA binding	Hs	molecular function
RNA polymerase II distal enhancer sequence-specific DNA binding	Hs	molecular function
core promoter binding	Hs	molecular function
fibrillar center	Hs	cellular component
activation of innate immune response	Hs	biological process
immune system process	Hs	biological process
nucleic acid binding	Hs	molecular function
DNA binding	Hs	molecular function
chromatin binding	Hs	molecular function
RNA binding	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
nucleolus	Hs	cellular component
cytoplasm	Hs	cellular component
DNA repair	Hs	biological process
DNA recombination	Hs	biological process
transcription, DNA-templated	Hs	biological process
regulation of transcription, DNA-templated	Hs	biological process
mRNA processing	Hs	biological process
cellular response to DNA damage stimulus	Hs	biological process
circadian rhythm	Hs	biological process
RNA splicing	Hs	biological process
membrane	Hs	cellular component
nuclear matrix	Hs	cellular component
nuclear speck	Hs	cellular component
paraspeckles	Hs	cellular component
regulation of circadian rhythm	Hs	biological process
negative regulation of circadian rhythm	Hs	biological process
identical protein binding	Hs	molecular function
protein homodimerization activity	Hs	molecular function
histone deacetylase binding	Hs	molecular function
transcription regulatory region DNA binding	Hs	molecular function
innate immune response	Hs	biological process
negative regulation of transcription, DNA-templated	Hs	biological process
positive regulation of transcription from RNA polymerase II promoter	Hs	biological process
rhythmic process	Hs	biological process
chromosome organization	Hs	biological process
regulation of cell cycle	Hs	biological process
histone H3 deacetylation	Hs	biological process
RNA polymerase II transcription factor complex	Hs	cellular component

GO (Blast)

23 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
chromatin	Hs	cellular component	364	1.08e-118
transcription regulatory region sequence-specific DNA binding	Hs	molecular function	364	1.08e-118
RNA polymerase II distal enhancer sequence-specific DNA binding	Hs	molecular function	364	1.08e-118
core promoter binding	Hs	molecular function	364	1.08e-118
fibrillar center	Hs	cellular component	357	2.59e-118
nucleic acid binding	Hs	molecular function	364	1.08e-118
DNA binding	Hs	molecular function	364	1.08e-118
chromatin binding	Hs	molecular function	364	1.08e-118
RNA binding	Hs	molecular function	364	1.08e-118
protein binding	Hs	molecular function	364	1.08e-118
nucleus	Hs	cellular component	364	1.08e-118
nucleoplasm	Hs	cellular component	364	1.08e-118
nucleolus	Hs	cellular component	359	1.16e-119
cytoplasm	Hs	cellular component	364	1.08e-118
membrane	Hs	cellular component	359	1.16e-119
nuclear matrix	Hs	cellular component	364	1.08e-118
nuclear speck	Hs	cellular component	364	1.08e-118
paraspeckles	Hs	cellular component	364	1.08e-118
identical protein binding	Hs	molecular function	359	1.16e-119
protein homodimerization activity	Hs	molecular function	364	1.08e-118
histone deacetylase binding	Hs	molecular function	364	1.08e-118
transcription regulatory region DNA binding	Hs	molecular function	364	1.08e-118
RNA polymerase II transcription factor complex	Hs	cellular component	364	1.08e-118

GO (InterProScan)

1 result

GO Term	Analysis	Type	e-value
nucleic acid binding	SUPERFAMILY	molecular function	4.14E-35

Gene Card

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