Aniseed - Gene card

External Database Gene Card

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WashU Genome Browser

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Genomicus Synteny Browser

Regulatory Regions

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Gene Phylogeny

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Gene Annotations

InterPro

20 results

IPR Term	Analysis	Definition
S1_dom	SMART	RNA-binding domain, S1
SH2	SMART	SH2 domain
YqgF/RNaseH-like_dom	SMART	YqgF/RNase H-like domain
S1_domain	ProSiteProfiles	S1 domain
RuvA_2-like	SUPERFAMILY	RuvA domain 2-like
Spt6_SH2	Pfam	Spt6, SH2 domain
TF_Spt6	PANTHER	Transcription elongation factor Spt6
Spt6_HHH	Pfam	Transcription elongation factor Spt6, helix-hairpin-helix motif
RNaseH-like_sf	SUPERFAMILY	Ribonuclease H-like superfamily
Spt6_YqgF	Pfam	Transcription elongation factor Spt6, YqgF domain
Spt6_acidic_N_dom	Pfam	Spt6 acidic, N-terminal domain
Spt6_HTH_DNA-bd_dom	Pfam	Helix-turn-helix DNA-binding domain of Spt6
NA-bd_OB-fold	SUPERFAMILY	Nucleic acid-binding, OB-fold
S1_domain	Pfam	S1 domain
Spt6_dom	Pfam	Death-like domain of Spt6
Spt6_SH2_C	CDD	Spt6, SH2 domain, C terminus
Spt6_SH2_N	CDD	Spt6, SH2 domain, N terminus
SH2_dom_sf	SUPERFAMILY	SH2 domain superfamily
SH2_dom_sf	Gene3D	SH2 domain superfamily
TF_Spt6	PIRSF	Transcription elongation factor Spt6

GOSlim

28 results

GO Term	Annotation Origin	Type
nucleic acid binding	Orthology	molecular function
DNA binding	Orthology	molecular function
transcription factor activity, sequence-specific DNA binding	Orthology	molecular function
RNA binding	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
nucleobase-containing compound metabolic process	Orthology	biological process
transcription, DNA-templated	Orthology	biological process
regulation of transcription, DNA-templated	Orthology	biological process
regulation of transcription from RNA polymerase II promoter	Orthology	biological process
transcription from RNA polymerase II promoter	Orthology	biological process
mRNA processing	Orthology	biological process
RNA splicing	Orthology	biological process
organelle organization	Orthology	biological process
negative regulation of transcription, DNA-templated	Orthology	biological process
nucleoplasm part	Orthology	cellular component
macromolecular complex	Orthology	cellular component
intracellular protein transport	Orthology	biological process
regulation of gene expression	Orthology	biological process
chromatin binding	Orthology	molecular function
macromolecular complex binding	Orthology	molecular function
positive regulation of transcription from RNA polymerase II promoter	Orthology	biological process
intracellular organelle part	Orthology	cellular component
intracellular non-membrane-bounded organelle	Orthology	cellular component
mRNA metabolic process	Orthology	biological process
organic substance transport	Orthology	biological process
cellular protein modification process	Orthology	biological process

GO (Orthology)

32 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
transcription factor activity, core RNA polymerase II binding	Hs	molecular function
nucleic acid binding	Hs	molecular function
DNA binding	Hs	molecular function
transcription factor activity, sequence-specific DNA binding	Hs	molecular function
RNA binding	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
nucleobase-containing compound metabolic process	Hs	biological process
chromatin remodeling	Hs	biological process
chromatin silencing	Hs	biological process
transcription, DNA-templated	Hs	biological process
regulation of transcription, DNA-templated	Hs	biological process
regulation of transcription from RNA polymerase II promoter	Hs	biological process
transcription from RNA polymerase II promoter	Hs	biological process
transcription elongation from RNA polymerase II promoter	Hs	biological process
mRNA processing	Hs	biological process
transcription elongation factor complex	Hs	cellular component
RNA splicing	Hs	biological process
regulation of mRNA export from nucleus	Hs	biological process
viral process	Hs	biological process
nucleosome binding	Hs	molecular function
regulation of DNA-templated transcription, elongation	Hs	biological process
positive regulation of transcription elongation from RNA polymerase II promoter	Hs	biological process
nucleosome organization	Hs	biological process
transcriptionally active chromatin	Hs	cellular component
histone binding	Hs	molecular function
mRNA transcription from RNA polymerase II promoter	Hs	biological process
regulation of mRNA processing	Hs	biological process
mRNA transport	Hs	biological process
negative regulation of histone H3-K27 methylation	Hs	biological process
chromatin maintenance	Hs	biological process

GO (Blast)

12 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score
transcription factor activity, core RNA polymerase II binding	Hs	molecular function	1647
nucleic acid binding	Hs	molecular function	1647
DNA binding	Hs	molecular function	1647
transcription factor activity, sequence-specific DNA binding	Hs	molecular function	1647
RNA binding	Hs	molecular function	1647
protein binding	Hs	molecular function	1647
nucleus	Hs	cellular component	1647
nucleoplasm	Hs	cellular component	1647
transcription elongation factor complex	Hs	cellular component	1647
nucleosome binding	Hs	molecular function	1647
transcriptionally active chromatin	Hs	cellular component	1647
histone binding	Hs	molecular function	1647

GO (InterProScan)

6 results

GO Term	Analysis	Type	e-value
transcription factor activity, core RNA polymerase II binding	PIRSF	molecular function	0.0
nucleic acid binding	Pfam	molecular function	2.6E-8
DNA binding	Pfam	molecular function	1.1E-21
nucleobase-containing compound metabolic process	SMART	biological process	0.0018
regulation of transcription from RNA polymerase II promoter	PIRSF	biological process	0.0
regulation of DNA-templated transcription, elongation	PIRSF	biological process	0.0

Gene Card

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