Aniseed - Gene card

Gene Card

Best human hits

RBMS1; RBMS2; RBMS3

Species

H.roretzi

Unique Gene ID

Harore.g00001900

Gene Model ID

Harore.CG.MTP2014.S76.g01900

Location

S76:171919..206467

Transcript Models and Sequences

Harore.CG.MTP2014.S76.g01900.01.t
Harore.CG.MTP2014.S76.g01900.02.t

External Database Gene Card

External database links

No result

Collections

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

5 results

IPR Term	Analysis	Definition
RBD_domain_sf	SUPERFAMILY	RNA-binding domain superfamily
RRM_dom	SMART	RNA recognition motif domain
RRM_dom	ProSiteProfiles	RNA recognition motif domain
Nucleotide-bd_a/b_plait_sf	Gene3D	Nucleotide-binding alpha-beta plait domain superfamily
RRM_dom	Pfam	RNA recognition motif domain

GOSlim

13 results

GO Term	Annotation Origin	Type
nucleic acid binding	Orthology	molecular function
DNA binding	Orthology	molecular function
double-stranded DNA binding	Orthology	molecular function
RNA binding	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
cytoplasm	Orthology	cellular component
cytosol	Orthology	cellular component
DNA replication	Orthology	biological process
RNA processing	Orthology	biological process
positive regulation of gene expression	Orthology	biological process
negative regulation of gene expression	Orthology	biological process
negative regulation of canonical Wnt signaling pathway	Orthology	biological process

GO (Orthology)

19 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
nucleic acid binding	Hs	molecular function
DNA binding	Hs	molecular function
double-stranded DNA binding	Hs	molecular function
single-stranded DNA binding	Hs	molecular function
RNA binding	Hs	molecular function
mRNA 3'-UTR binding	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
cytoplasm	Hs	cellular component
cytosol	Hs	cellular component
DNA replication	Hs	biological process
RNA processing	Hs	biological process
poly(A) binding	Hs	molecular function
poly(U) RNA binding	Hs	molecular function
positive regulation of gene expression	Hs	biological process
negative regulation of gene expression	Hs	biological process
mRNA 3'-UTR AU-rich region binding	Hs	molecular function
positive regulation of translation	Hs	biological process
negative regulation of canonical Wnt signaling pathway	Hs	biological process

GO (Blast)

13 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
nucleic acid binding	Hs	molecular function	305	2.11e-95
DNA binding	Hs	molecular function	304	2.17e-95
double-stranded DNA binding	Hs	molecular function	304	2.17e-95
single-stranded DNA binding	Hs	molecular function	304	2.17e-95
RNA binding	Hs	molecular function	305	2.11e-95
mRNA 3'-UTR binding	Hs	molecular function	305	2.11e-95
protein binding	Hs	molecular function	304	2.17e-95
nucleus	Hs	cellular component	304	2.17e-95
cytoplasm	Hs	cellular component	305	2.11e-95
cytosol	Hs	cellular component	304	2.17e-95
poly(A) binding	Hs	molecular function	305	2.11e-95
poly(U) RNA binding	Hs	molecular function	305	2.11e-95
mRNA 3'-UTR AU-rich region binding	Hs	molecular function	305	2.11e-95

GO (InterProScan)

1 result

GO Term	Analysis	Type	e-value
nucleic acid binding	SUPERFAMILY	molecular function	1.76E-32