Gene Card
Best human hits
SNRNP35; SNRNP70; SRSF8
Species
Unique Gene ID
Harore.g00011199
Gene Model ID
Harore.CG.MTP2014.S9.g11199
Location
S9:328218..332711
Transcript Models and Sequences
Harore.CG.MTP2014.S9.g11199.01.t
Harore.CG.MTP2014.S9.g11199.02.t
Harore.CG.MTP2014.S9.g11199.03.t
n/a
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The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
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You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.
Click here to see the tree inference method
InterPro
7 results
| IPR Term | Analysis | Definition |
|---|---|---|
| Nucleotide-bd_a/b_plait_sf | Gene3D | Nucleotide-binding alpha-beta plait domain superfamily |
| RRM_dom | Pfam | RNA recognition motif domain |
| snRNP70_RRM | CDD | snRNP70, RNA recognition motif |
| RBD_domain_sf | SUPERFAMILY | RNA-binding domain superfamily |
| U1snRNP70_N | Pfam | U1 small nuclear ribonucleoprotein of 70kDa N-terminal |
| RRM_dom | ProSiteProfiles | RNA recognition motif domain |
| RRM_dom | SMART | RNA recognition motif domain |
GOSlim
20 results
| GO Term | Annotation Origin | Type |
|---|---|---|
| mRNA splicing, via spliceosome | Orthology | biological process |
| nucleic acid binding | Orthology | molecular function |
| RNA binding | Orthology | molecular function |
| protein binding | Orthology | molecular function |
| nucleus | Orthology | cellular component |
| nucleoplasm | Orthology | cellular component |
| nucleolus | Blast | cellular component |
| cytoplasm | Orthology | cellular component |
| cytosol | Blast | cellular component |
| mRNA processing | Orthology | biological process |
| RNA splicing | Orthology | biological process |
| nuclear speck | Orthology | cellular component |
| nuclear part | Orthology | cellular component |
| macromolecular complex | Orthology | cellular component |
| nucleoside-triphosphatase activity | Orthology | molecular function |
| regulation of gene expression | Orthology | biological process |
| positive regulation of gene expression | Orthology | biological process |
| response to lipid | Orthology | biological process |
| cellular response to organic substance | Orthology | biological process |
| macromolecular complex binding | Orthology | molecular function |
GO (Orthology)
25 results
| GO Term | SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae |
Type |
|---|---|---|
| commitment complex | Hs | cellular component |
| mRNA splicing, via spliceosome | Hs | biological process |
| nucleic acid binding | Hs | molecular function |
| RNA binding | Hs | molecular function |
| mRNA binding | Hs | molecular function |
| protein binding | Hs | molecular function |
| nucleus | Hs | cellular component |
| nucleoplasm | Hs | cellular component |
| spliceosomal complex | Hs | cellular component |
| U1 snRNP | Hs | cellular component |
| cytoplasm | Hs | cellular component |
| mRNA processing | Hs | biological process |
| RNA splicing | Hs | biological process |
| nuclear speck | Hs | cellular component |
| intracellular ribonucleoprotein complex | Hs | cellular component |
| U1 snRNA binding | Hs | molecular function |
| regulation of ATPase activity | Hs | biological process |
| regulation of RNA splicing | Hs | biological process |
| positive regulation of mRNA splicing, via spliceosome | Hs | biological process |
| U2-type prespliceosome | Hs | cellular component |
| precatalytic spliceosome | Hs | cellular component |
| cellular response to retinoic acid | Hs | biological process |
| cellular response to tumor necrosis factor | Hs | biological process |
| cellular response to transforming growth factor beta stimulus | Hs | biological process |
| U1 snRNP binding | Hs | molecular function |
GO (Blast)
20 results
| GO Term | SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae |
Type | Score | E-value |
|---|---|---|---|---|
| commitment complex | Hs | cellular component | 252 | 4.93e-79 |
| nucleic acid binding | Hs | molecular function | 252 | 4.93e-79 |
| RNA binding | Hs | molecular function | 252 | 4.93e-79 |
| mRNA binding | Hs | molecular function | 252 | 4.93e-79 |
| protein binding | Hs | molecular function | 252 | 4.93e-79 |
| nucleus | Hs | cellular component | 252 | 4.93e-79 |
| nucleoplasm | Hs | cellular component | 252 | 4.93e-79 |
| spliceosomal complex | Hs | cellular component | 252 | 4.93e-79 |
| U1 snRNP | Hs | cellular component | 252 | 4.93e-79 |
| U12-type spliceosomal complex | Hs | cellular component | 90.1 | 2.40e-20 |
| nucleolus | Hs | cellular component | 90.1 | 2.40e-20 |
| cytoplasm | Hs | cellular component | 252 | 4.93e-79 |
| cytosol | Hs | cellular component | 61.2 | 2.55e-10 |
| nuclear speck | Hs | cellular component | 252 | 4.93e-79 |
| snRNA binding | Hs | molecular function | 90.1 | 2.40e-20 |
| intracellular ribonucleoprotein complex | Hs | cellular component | 252 | 4.93e-79 |
| U1 snRNA binding | Hs | molecular function | 252 | 4.93e-79 |
| U2-type prespliceosome | Hs | cellular component | 252 | 4.93e-79 |
| precatalytic spliceosome | Hs | cellular component | 252 | 4.93e-79 |
| U1 snRNP binding | Hs | molecular function | 252 | 4.93e-79 |
GO (InterProScan)
2 results
| GO Term | Analysis | Type | e-value |
|---|---|---|---|
| nucleic acid binding | SUPERFAMILY | molecular function | 7.52E-28 |
| U1 snRNA binding | CDD | molecular function | 7.39873E-55 |
