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GENE CARD

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Gene Card

Best human hits

FUCA1; FUCA2

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00000251

Gene Model ID

KH2012:KH.C1.1226

Location

KhC1:7934768..7938711

Transcript Models and Sequences

  KH2012:KH.C1.1226.v1.A.ND1-1
KH2012:KH.C1.1226.v1.A.nonSL2-1

External Database Gene Card

External database links

2 results

Database Gene ID
ENSEMBL ENSCING00000007577
NCBI Reference Sequence XM_002131448.2
Collections

Gateway full ORF

2 results

cima836736

Plate: VES63_O02

cima863836

Plate: VES65_L08

Gene collection 1 (N. Satoh)

1 result

cilv003c17

Plate: R1CiGC25g11

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

9 results

IPR Term Analysis Definition
Glycoside_hydrolase_SF SUPERFAMILY Glycoside hydrolase superfamily
Fucosidase_C Pfam Alpha-L-fucosidase, C-terminal
Glyco_hydro_29_CS ProSitePatterns Glycoside hydrolase, family 29, conserved site
Glyco_hydro_29 PANTHER Glycoside hydrolase, family 29
Glyco_hydro_29 Pfam Glycoside hydrolase, family 29
Glyco_hydro_b Gene3D Glycosyl hydrolase, all-beta
FUC_metazoa-typ PIRSF Alpha-L-fucosidase, metazoa-type
FUC_metazoa-typ PRINTS Alpha-L-fucosidase, metazoa-type
Glyco_hydro_29 SMART Glycoside hydrolase, family 29

GOSlim

13 results

GO Term Annotation Origin Type
protein binding Blast molecular function
extracellular region Blast cellular component
extracellular space Blast cellular component
cytoplasm Blast cellular component
lysosome Blast cellular component
endoplasmic reticulum lumen Blast cellular component
hydrolase activity Blast molecular function
extracellular exosome Blast cellular component
cytoplasmic vesicle Blast cellular component
vacuolar part Blast cellular component
endomembrane system Blast cellular component
intracellular organelle lumen Blast cellular component
organic substance metabolic process InterProScan biological process

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type

GO (Blast)

12 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
alpha-L-fucosidase activity Hs molecular function 568 0.0
protein binding Hs molecular function 568 0.0
extracellular region Hs cellular component 568 0.0
extracellular space Hs cellular component 568 0.0
cytoplasm Hs cellular component 522 0.0
lysosome Hs cellular component 522 0.0
endoplasmic reticulum lumen Hs cellular component 568 0.0
hydrolase activity Hs molecular function 568 0.0
hydrolase activity, acting on glycosyl bonds Hs molecular function 568 0.0
azurophil granule lumen Hs cellular component 568 0.0
lysosomal lumen Hs cellular component 522 0.0
extracellular exosome Hs cellular component 568 0.0

GO (InterProScan)

3 results

GO Term Analysis Type e-value
alpha-L-fucosidase activity SMART molecular function 2.7E-229
carbohydrate metabolic process SMART biological process 2.7E-229
fucose metabolic process PIRSF biological process 2.6E-120

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