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GENE CARD

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Gene Card

Best human hits

USP11; USP2; USP8

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00000735

Gene Model ID

KH2012:KH.C1.491

Location

KhC1:6017299..6021237

Transcript Models and Sequences

  KH2012:KH.C1.491.v1.A.nonSL2-1
KH2012:KH.C1.491.v1.A.SL1-1

External Database Gene Card

External database links

2 results

Database Gene ID
ENSEMBL ENSCING00000000779
NCBI Reference Sequence XM_018813078.1
Collections

Gateway full ORF

2 results

cien102212

Plate: VES86_A07

cien45312

Plate: VES77_C11

Gene collection 1 (N. Satoh)

2 results

ciad075k23

Plate: R1CiGC07b19

citb081g18

Plate: R1CiGC46b17

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

9 results

IPR Term Analysis Definition
USP_CS ProSitePatterns Ubiquitin specific protease, conserved site
Peptidase_C19_UCH Pfam Peptidase C19, ubiquitin carboxyl-terminal hydrolase
USP_dom ProSiteProfiles Ubiquitin specific protease domain
Rhodanese-like_dom ProSiteProfiles Rhodanese-like domain
Rhodanese-like_dom_sf SUPERFAMILY Rhodanese-like domain superfamily
Rhodanese-like_dom_sf Gene3D Rhodanese-like domain superfamily
Rhodanese-like_dom SMART Rhodanese-like domain
USP8_dimer Pfam USP8 dimerisation domain
Rhodanese-like_dom Pfam Rhodanese-like domain

GOSlim

38 results

GO Term Annotation Origin Type
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Blast cellular component
cytoplasm Orthology cellular component
endosome Orthology cellular component
early endosome Orthology cellular component
centrosome Blast cellular component
cytosol Orthology cellular component
plasma membrane Orthology cellular component
proteolysis Orthology biological process
cell cycle Orthology biological process
peptidase activity Orthology molecular function
cell proliferation Orthology biological process
membrane Orthology cellular component
hydrolase activity Orthology molecular function
midbody Orthology cellular component
ubiquitin protein ligase binding Blast molecular function
identical protein binding Blast molecular function
metal ion binding Blast molecular function
perinuclear region of cytoplasm Blast cellular component
positive regulation of canonical Wnt signaling pathway Orthology biological process
membrane organization Orthology biological process
cell division Orthology biological process
endopeptidase activity Orthology molecular function
peptidase activity, acting on L-amino acid peptides Orthology molecular function
organelle organization Orthology biological process
intracellular organelle part Orthology cellular component
whole membrane Orthology cellular component
bounding membrane of organelle Orthology cellular component
organelle Orthology cellular component
postsynapse Orthology cellular component
neuron part Orthology cellular component
plasma membrane part Orthology cellular component
membrane part Orthology cellular component
cell adhesion molecule binding Orthology molecular function
intracellular non-membrane-bounded organelle Blast cellular component
cell periphery Blast cellular component
cytoplasmic part Blast cellular component

GO (Orthology)

32 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
mitotic cytokinesis Hs biological process
cysteine-type endopeptidase activity Hs molecular function
thiol-dependent ubiquitin-specific protease activity Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
cytoplasm Hs cellular component
endosome Hs cellular component
early endosome Hs cellular component
cytosol Hs cellular component
plasma membrane Hs cellular component
proteolysis Hs biological process
ubiquitin-dependent protein catabolic process Hs biological process
endosome organization Hs biological process
cell cycle Hs biological process
peptidase activity Hs molecular function
cysteine-type peptidase activity Hs molecular function
cell proliferation Hs biological process
endosome membrane Hs cellular component
postsynaptic density Hs cellular component
membrane Hs cellular component
protein deubiquitination Hs biological process
hydrolase activity Hs molecular function
SH3 domain binding Hs molecular function
extrinsic component of plasma membrane Hs cellular component
midbody Hs cellular component
extrinsic component of endosome membrane Hs cellular component
thiol-dependent ubiquitinyl hydrolase activity Hs molecular function
dendritic spine Hs cellular component
cadherin binding Hs molecular function
protein K63-linked deubiquitination Hs biological process
protein K48-linked deubiquitination Hs biological process
positive regulation of canonical Wnt signaling pathway Hs biological process

GO (Blast)

31 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
cysteine-type endopeptidase activity Hs molecular function 419 2.57e-128
thiol-dependent ubiquitin-specific protease activity Hs molecular function 419 2.57e-128
protein binding Hs molecular function 419 2.57e-128
nucleus Hs cellular component 419 2.57e-128
nucleoplasm Hs cellular component 224 9.96e-63
chromosome Hs cellular component 206 2.07e-54
cytoplasm Hs cellular component 419 2.57e-128
endosome Hs cellular component 419 2.57e-128
early endosome Hs cellular component 419 2.57e-128
centrosome Hs cellular component 224 9.96e-63
cytosol Hs cellular component 419 2.57e-128
plasma membrane Hs cellular component 419 2.57e-128
cell cortex Hs cellular component 224 9.96e-63
peptidase activity Hs molecular function 419 2.57e-128
cysteine-type peptidase activity Hs molecular function 419 2.57e-128
endosome membrane Hs cellular component 419 2.57e-128
postsynaptic density Hs cellular component 419 2.57e-128
membrane Hs cellular component 419 2.57e-128
hydrolase activity Hs molecular function 419 2.57e-128
SH3 domain binding Hs molecular function 419 2.57e-128
extrinsic component of plasma membrane Hs cellular component 419 2.57e-128
cyclin binding Hs molecular function 224 9.96e-63
midbody Hs cellular component 419 2.57e-128
extrinsic component of endosome membrane Hs cellular component 419 2.57e-128
ubiquitin protein ligase binding Hs molecular function 224 9.96e-63
thiol-dependent ubiquitinyl hydrolase activity Hs molecular function 419 2.57e-128
identical protein binding Hs molecular function 224 9.96e-63
dendritic spine Hs cellular component 419 2.57e-128
cadherin binding Hs molecular function 419 2.57e-128
metal ion binding Hs molecular function 224 9.96e-63
perinuclear region of cytoplasm Hs cellular component 224 9.96e-63

GO (InterProScan)

3 results

GO Term Analysis Type e-value
ubiquitin-dependent protein catabolic process ProSitePatterns biological process
protein deubiquitination Pfam biological process 1.3E-70
thiol-dependent ubiquitinyl hydrolase activity Pfam molecular function 1.3E-70

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