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GENE CARD

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Gene Card

Best human hits

FAM49A; FAM49B

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00000976

Gene Model ID

KH2012:KH.C1.710

Location

KhC1:4782753..4792033

Transcript Models and Sequences

  KH2012:KH.C1.710.v1.A.SL1-1
KH2012:KH.C1.710.v1.A.SL2-1

External Database Gene Card

External database links

2 results

Database Gene ID
ENSEMBL ENSCING00000005244
NCBI Reference Sequence XM_002126648.4
Collections

Gateway full ORF

2 results

cien125993

Plate: VES89_D24

cien171379

Plate: VES96_D19

Gene collection 1 (N. Satoh)

2 results

cieg029g17

Plate: R1CiGC20g02

cicl031f06

Plate: R1CiGC12g10

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

1 result

IPR Term Analysis Definition
DUF1394 Pfam Protein of unknown function DUF1394

GOSlim

19 results

GO Term Annotation Origin Type
protein binding Orthology molecular function
extracellular region Orthology cellular component
intracellular Orthology cellular component
membrane Orthology cellular component
extracellular exosome Orthology cellular component
membrane organization Orthology biological process
organelle organization Orthology biological process
organelle Orthology cellular component
cell projection Orthology cellular component
plasma membrane region Orthology cellular component
macromolecular complex Orthology cellular component
receptor binding Orthology molecular function
macromolecular complex binding Orthology molecular function
intracellular organelle part Orthology cellular component
cytoplasmic vesicle Orthology cellular component
endomembrane system Orthology cellular component
intracellular organelle lumen Orthology cellular component
immune system process Orthology biological process
cell adhesion Orthology biological process

GO (Orthology)

10 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
platelet degranulation Hs biological process
protein binding Hs molecular function
extracellular region Hs cellular component
intracellular Hs cellular component
cilium Hs cellular component
membrane Hs cellular component
MHC class Ib protein binding, via antigen binding groove Hs molecular function
platelet alpha granule lumen Hs cellular component
positive regulation of T cell activation Hs biological process
extracellular exosome Hs cellular component

GO (Blast)

8 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
protein binding Hs molecular function 391 6.82e-137
extracellular region Hs cellular component 391 6.82e-137
intracellular Hs cellular component 379 2.29e-132
cilium Hs cellular component 391 6.82e-137
membrane Hs cellular component 391 6.82e-137
MHC class Ib protein binding, via antigen binding groove Hs molecular function 391 6.82e-137
platelet alpha granule lumen Hs cellular component 391 6.82e-137
extracellular exosome Hs cellular component 391 6.82e-137

GO (InterProScan)

No result

GO Term Analysis Type e-value

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