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Gene Card

Best human hits

SRR

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00001091

Gene Model ID

KH2012:KH.C1.815

Location

KhC1:6226588..6228339

Transcript Models and Sequences

  KH2012:KH.C1.815.v1.A.SL1-1

External Database Gene Card

External database links

3 results

Database Gene ID
ENSEMBL ENSCING00000012724
NCBI Reference Sequence XM_002121153.4
NCBI Reference Sequence XM_018813860.1
Collections

Gateway full ORF

2 results

cien92079

Plate: VES84_C18

cima879668

Plate: VES68_M14

Gene collection 1 (N. Satoh)

1 result

cibd010a23

Plate: R1CiGC37f15

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

4 results

IPR Term Analysis Definition
D-Cys_desShydrase TIGRFAM D-cysteine desulfhydrase
Trypto_synt_PLP_dependent SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzyme
PLP-dep Pfam Pyridoxal-phosphate dependent enzyme
ACCD_DCysDesulf PIRSF 1-aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase

GOSlim

18 results

GO Term Annotation Origin Type
nucleotide binding Blast molecular function
magnesium ion binding Blast molecular function
catalytic activity Blast molecular function
calcium ion binding Blast molecular function
ATP binding Blast molecular function
cytoplasm Blast cellular component
plasma membrane Blast cellular component
protein homodimerization activity Blast molecular function
neuronal cell body Blast cellular component
apical part of cell Blast cellular component
metal ion binding Blast molecular function
cation binding Blast molecular function
small molecule binding Blast molecular function
anion binding Blast molecular function
protein binding Blast molecular function
heterocyclic compound binding Blast molecular function
organic cyclic compound binding Blast molecular function
coenzyme binding Blast molecular function

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type

GO (Blast)

20 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
nucleotide binding Hs molecular function 41.2 6.49e-04
magnesium ion binding Hs molecular function 41.2 6.49e-04
catalytic activity Hs molecular function 41.2 6.49e-04
L-serine ammonia-lyase activity Hs molecular function 41.2 6.49e-04
calcium ion binding Hs molecular function 41.2 6.49e-04
ATP binding Hs molecular function 41.2 6.49e-04
cytoplasm Hs cellular component 41.2 6.49e-04
plasma membrane Hs cellular component 41.2 6.49e-04
D-serine ammonia-lyase activity Hs molecular function 41.2 6.49e-04
glycine binding Hs molecular function 41.2 6.49e-04
lyase activity Hs molecular function 41.2 6.49e-04
isomerase activity Hs molecular function 41.2 6.49e-04
threonine racemase activity Hs molecular function 41.2 6.49e-04
PDZ domain binding Hs molecular function 41.2 6.49e-04
pyridoxal phosphate binding Hs molecular function 41.2 6.49e-04
serine racemase activity Hs molecular function 41.2 6.49e-04
protein homodimerization activity Hs molecular function 41.2 6.49e-04
neuronal cell body Hs cellular component 41.2 6.49e-04
apical part of cell Hs cellular component 41.2 6.49e-04
metal ion binding Hs molecular function 41.2 6.49e-04

GO (InterProScan)

1 result

GO Term Analysis Type e-value
catalytic activity TIGRFAM molecular function 8.4E-91

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