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Gene Card

Best human hits

ABCC10; ABCC2; ABCC4

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00001574

Gene Model ID

KH2012:KH.C10.36

Location

KhC10:120357..130936

Transcript Models and Sequences

  KH2012:KH.C10.36.v1.A.ND1-1

External Database Gene Card

External database links

No result

Collections

Gene collection 1 (N. Satoh)

1 result

ciad072b23

Plate: R1CiGC07k01

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

9 results

IPR Term Analysis Definition
ABC_transporter-like ProSiteProfiles ABC transporter-like
ABC_transporter_CS ProSitePatterns ABC transporter, conserved site
ABC1_TM_dom ProSiteProfiles ABC transporter type 1, transmembrane domain
P-loop_NTPase SUPERFAMILY P-loop containing nucleoside triphosphate hydrolase
ABC1_TM_dom Pfam ABC transporter type 1, transmembrane domain
ABC1_TM_sf Gene3D ABC transporter type 1, transmembrane domain superfamily
ABC_transporter-like Pfam ABC transporter-like
ABC1_TM_sf SUPERFAMILY ABC transporter type 1, transmembrane domain superfamily
AAA+_ATPase SMART AAA+ ATPase domain

GOSlim

24 results

GO Term Annotation Origin Type
nucleotide binding Orthology molecular function
protein binding Blast molecular function
ATP binding Orthology molecular function
lysosomal membrane Orthology cellular component
plasma membrane Orthology cellular component
integral component of plasma membrane Orthology cellular component
cell surface Blast cellular component
membrane Orthology cellular component
integral component of membrane Orthology cellular component
basolateral plasma membrane Blast cellular component
apical plasma membrane Blast cellular component
brush border membrane Blast cellular component
transmembrane transport Orthology biological process
oxidation-reduction process Blast biological process
nucleoside-triphosphatase activity Orthology molecular function
ion transport Orthology biological process
organic substance transport Blast biological process
catalytic activity Blast molecular function
whole membrane Blast cellular component
intracellular organelle part Blast cellular component
cytoplasmic vesicle Blast cellular component
endomembrane system Blast cellular component
bounding membrane of organelle Blast cellular component
cell junction Blast cellular component

GO (Orthology)

11 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
nucleotide binding Hs molecular function
ATP binding Hs molecular function
lysosomal membrane Hs cellular component
plasma membrane Hs cellular component
integral component of plasma membrane Hs cellular component
membrane Hs cellular component
integral component of membrane Hs cellular component
ATPase activity Hs molecular function
ATPase activity, coupled to transmembrane movement of substances Hs molecular function
ATPase-coupled anion transmembrane transporter activity Hs molecular function
transmembrane transport Hs biological process

GO (Blast)

23 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
nucleotide binding Hs molecular function 986 0.0
protein binding Hs molecular function 760 0.0
ATP binding Hs molecular function 986 0.0
lysosomal membrane Hs cellular component 986 0.0
plasma membrane Hs cellular component 986 0.0
integral component of plasma membrane Hs cellular component 986 0.0
organic anion transmembrane transporter activity Hs molecular function 760 0.0
cell surface Hs cellular component 760 0.0
bilirubin transmembrane transporter activity Hs molecular function 760 0.0
ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism Hs molecular function 673 0.0
membrane Hs cellular component 986 0.0
integral component of membrane Hs cellular component 986 0.0
basolateral plasma membrane Hs cellular component 673 0.0
apical plasma membrane Hs cellular component 760 0.0
15-hydroxyprostaglandin dehydrogenase (NAD+) activity Hs molecular function 673 0.0
ATPase activity Hs molecular function 986 0.0
protein domain specific binding Hs molecular function 760 0.0
transmembrane transporter activity Hs molecular function 760 0.0
platelet dense granule membrane Hs cellular component 673 0.0
brush border membrane Hs cellular component 760 0.0
ATPase activity, coupled to transmembrane movement of substances Hs molecular function 986 0.0
ATPase-coupled anion transmembrane transporter activity Hs molecular function 986 0.0
intercellular canaliculus Hs cellular component 760 0.0

GO (InterProScan)

5 results

GO Term Analysis Type e-value
ATP binding SUPERFAMILY molecular function 1.2E-52
integral component of membrane SUPERFAMILY cellular component 1.2E-52
ATPase activity Pfam molecular function 3.5E-30
ATPase activity, coupled to transmembrane movement of substances Pfam molecular function 1.7E-40
transmembrane transport Pfam biological process 1.7E-40

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