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GENE CARD

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  1. Gene 'KH2012:KH.C11.224'

Gene Card

Best human hits

CHRAC1; DRAP1; NFYC

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00002040

Gene Model ID

KH2012:KH.C11.224

Location

KhC11:3809753..3812893

Transcript Models and Sequences

  KH2012:KH.C11.224.v1.A.ND3-1
KH2012:KH.C11.224.v2.A.ND2-2
KH2012:KH.C11.224.v2.A.SL1-2
KH2012:KH.C11.224.v3.A.SL1-1

External Database Gene Card

External database links

1 result

Database Gene ID
ENSEMBL ENSCING00000025006
Collections

Gateway full ORF

2 results

cima856918

Plate: VES64_C02

cima878374

Plate: VES68_J09

Gene collection 1 (N. Satoh)

1 result

citb018b07

Plate: R1CiGC31e21

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

3 results

IPR Term Analysis Definition
Histone-fold SUPERFAMILY Histone-fold
CBFA_NFYB_domain Pfam Transcription factor CBF/NF-Y/archaeal histone domain
Histone-fold Gene3D Histone-fold

GOSlim

24 results

GO Term Annotation Origin Type
negative regulation of transcription from RNA polymerase II promoter Orthology biological process
RNA polymerase II core promoter proximal region sequence-specific DNA binding Blast molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Orthology molecular function
DNA binding Orthology molecular function
transcription factor activity, sequence-specific DNA binding Orthology molecular function
transcription coactivator activity Blast molecular function
transcription corepressor activity Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Blast cellular component
transcription, DNA-templated Orthology biological process
regulation of transcription, DNA-templated Orthology biological process
transcription factor binding Blast molecular function
transferase activity Blast molecular function
identical protein binding Orthology molecular function
transcription regulatory region DNA binding Blast molecular function
protein heterodimerization activity Orthology molecular function
RNA polymerase II regulatory region sequence-specific DNA binding Blast molecular function
transferase activity, transferring phosphorus-containing groups Blast molecular function
DNA metabolic process Blast biological process
intracellular non-membrane-bounded organelle Blast cellular component
nuclear lumen Blast cellular component
macromolecular complex Blast cellular component
nuclear part Blast cellular component

GO (Orthology)

11 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
negative regulation of transcription from RNA polymerase II promoter Hs biological process
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function
DNA binding Hs molecular function
transcription factor activity, sequence-specific DNA binding Hs molecular function
transcription corepressor activity Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
identical protein binding Hs molecular function
protein heterodimerization activity Hs molecular function

GO (Blast)

23 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function 54.3 4.26e-08
RNA polymerase II distal enhancer sequence-specific DNA binding Hs molecular function 54.3 4.26e-08
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function 150 4.29e-44
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function 54.3 4.26e-08
DNA binding Hs molecular function 150 4.29e-44
transcription factor activity, sequence-specific DNA binding Hs molecular function 150 4.29e-44
transcription coactivator activity Hs molecular function 54.3 4.26e-08
transcription corepressor activity Hs molecular function 150 4.29e-44
DNA-directed DNA polymerase activity Hs molecular function 40.4 2.09e-04
protein binding Hs molecular function 150 4.29e-44
nucleus Hs cellular component 150 4.29e-44
nucleoplasm Hs cellular component 54.3 4.26e-08
transcription factor binding Hs molecular function 54.3 4.26e-08
epsilon DNA polymerase complex Hs cellular component 40.4 2.09e-04
CHRAC Hs cellular component 40.4 2.09e-04
CCAAT-binding factor complex Hs cellular component 54.3 4.26e-08
transferase activity Hs molecular function 40.4 2.09e-04
nucleotidyltransferase activity Hs molecular function 40.4 2.09e-04
protein-DNA complex Hs cellular component 54.3 4.26e-08
identical protein binding Hs molecular function 150 4.29e-44
transcription regulatory region DNA binding Hs molecular function 54.3 4.26e-08
protein heterodimerization activity Hs molecular function 150 4.29e-44
RNA polymerase II transcription factor complex Hs cellular component 54.3 4.26e-08

GO (InterProScan)

1 result

GO Term Analysis Type e-value
protein heterodimerization activity Gene3D molecular function 4.7E-29

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