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Gene Card

Best human hits

RNF165; ZNRF1; ZNRF2

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00002147

Gene Model ID

KH2012:KH.C11.323

Location

KhC11:313742..321288

Transcript Models and Sequences

  KH2012:KH.C11.323.v1.A.SL1-1

External Database Gene Card

External database links

2 results

Database Gene ID
ENSEMBL ENSCING00000006109
NCBI Reference Sequence XM_002130561.3
Collections

Gateway full ORF

4 results

cien29478

Plate: VES74_M24

cima829630

Plate: VES61_O18

cima857258

Plate: VES64_H02

cien218920

Plate: VES104_K07

Gene collection 1 (N. Satoh)

2 results

ciad008b20

Plate: R1CiGC01d02

cieg025a06

Plate: R1CiGC19d21

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

4 results

IPR Term Analysis Definition
Znf_RING/FYVE/PHD Gene3D Zinc finger, RING/FYVE/PHD-type
Znf_RING ProSiteProfiles Zinc finger, RING-type
Znf_RING SMART Zinc finger, RING-type
Znf_RING Pfam Zinc finger, RING-type

GOSlim

29 results

GO Term Annotation Origin Type
protein polyubiquitination Orthology biological process
ubiquitin-protein transferase activity Orthology molecular function
protein binding Blast molecular function
nucleus Blast cellular component
cytoplasm Orthology cellular component
lysosome Orthology cellular component
lysosomal membrane Orthology cellular component
endosome Orthology cellular component
cytosol Orthology cellular component
plasma membrane Orthology cellular component
zinc ion binding Blast molecular function
membrane Orthology cellular component
protein ubiquitination Orthology biological process
transferase activity Orthology molecular function
ligase activity Blast molecular function
cell junction Orthology cellular component
cytoplasmic vesicle Orthology cellular component
macromolecular complex Orthology cellular component
synapse Orthology cellular component
metal ion binding Orthology molecular function
intracellular organelle part Orthology cellular component
whole membrane Orthology cellular component
bounding membrane of organelle Orthology cellular component
organelle membrane Orthology cellular component
synaptic membrane Orthology cellular component
neuron part Orthology cellular component
proteolysis Orthology biological process
synapse part Blast cellular component
endomembrane system Blast cellular component

GO (Orthology)

20 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
protein polyubiquitination Hs biological process
ubiquitin-protein transferase activity Hs molecular function
cytoplasm Hs cellular component
lysosome Hs cellular component
lysosomal membrane Hs cellular component
endosome Hs cellular component
cytosol Hs cellular component
plasma membrane Hs cellular component
endosome membrane Hs cellular component
membrane Hs cellular component
protein ubiquitination Hs biological process
transferase activity Hs molecular function
cell junction Hs cellular component
cytoplasmic vesicle membrane Hs cellular component
macromolecular complex Hs cellular component
presynaptic membrane Hs cellular component
proteasome-mediated ubiquitin-dependent protein catabolic process Hs biological process
synapse Hs cellular component
metal ion binding Hs molecular function
ubiquitin protein ligase activity Hs molecular function

GO (Blast)

23 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
ubiquitin-protein transferase activity Hs molecular function 142 6.06e-42
protein binding Hs molecular function 111 8.02e-30
nucleus Hs cellular component 55.1 4.86e-09
cytoplasm Hs cellular component 142 6.06e-42
lysosome Hs cellular component 142 6.06e-42
lysosomal membrane Hs cellular component 142 6.06e-42
endosome Hs cellular component 142 6.06e-42
cytosol Hs cellular component 142 6.06e-42
plasma membrane Hs cellular component 142 6.06e-42
zinc ion binding Hs molecular function 55.1 4.86e-09
endosome membrane Hs cellular component 142 6.06e-42
membrane Hs cellular component 142 6.06e-42
transferase activity Hs molecular function 142 6.06e-42
ligase activity Hs molecular function 55.1 4.86e-09
cell junction Hs cellular component 142 6.06e-42
cytoplasmic vesicle membrane Hs cellular component 142 6.06e-42
synaptic vesicle membrane Hs cellular component 111 8.02e-30
cytoplasmic vesicle Hs cellular component 111 8.02e-30
macromolecular complex Hs cellular component 142 6.06e-42
presynaptic membrane Hs cellular component 142 6.06e-42
synapse Hs cellular component 142 6.06e-42
metal ion binding Hs molecular function 142 6.06e-42
ubiquitin protein ligase activity Hs molecular function 142 6.06e-42

GO (InterProScan)

No result

GO Term Analysis Type e-value

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