Aniseed - Gene card

Gene Card

Best human hits

H3F3A; HIST2H3A; HIST2H3D

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00002294

Gene Model ID

KH2012:KH.C11.46

Location

KhC11:921312..922885

Transcript Models and Sequences

External Database Gene Card

External database links

2 results

Database	Gene ID
ENSEMBL	ENSCING00000002753
NCBI Reference Sequence	XM_002131698.4

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

3 results

cinc005f21

Plate: R1CiGC44h04

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

7 results

IPR Term	Analysis	Definition
Histone_H2A/H2B/H3	Pfam	Histone H2A/H2B/H3
Histone_H3/CENP-A	ProSitePatterns	Histone H3/CENP-A
Histone-fold	Gene3D	Histone-fold
Histone-fold	SUPERFAMILY	Histone-fold
Histone_H3/CENP-A	PRINTS	Histone H3/CENP-A
Histone_H3/CENP-A	PANTHER	Histone H3/CENP-A
Histone_H3/CENP-A	SMART	Histone H3/CENP-A

GOSlim

31 results

GO Term	Annotation Origin	Type
DNA binding	Orthology	molecular function
protein binding	Orthology	molecular function
extracellular region	Orthology	cellular component
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
spermatogenesis	Orthology	biological process
blood coagulation	Orthology	biological process
cell proliferation	Orthology	biological process
macromolecular complex	Orthology	cellular component
protein heterodimerization activity	Orthology	molecular function
extracellular exosome	Orthology	cellular component
organelle organization	Orthology	biological process
negative regulation of transcription, DNA-templated	Orthology	biological process
intracellular non-membrane-bounded organelle	Orthology	cellular component
nuclear lumen	Orthology	cellular component
intracellular organelle part	Orthology	cellular component
RNA polymerase II regulatory region sequence-specific DNA binding	Orthology	molecular function
cell differentiation	Orthology	biological process
cell development	Orthology	biological process
sexual reproduction	Orthology	biological process
reproductive process	Orthology	biological process
animal organ development	Orthology	biological process
cellular component organization	Orthology	biological process
chromatin binding	Orthology	molecular function
macromolecular complex binding	Orthology	molecular function
developmental process	Orthology	biological process
anatomical structure development	Orthology	biological process
negative regulation of gene expression	Orthology	biological process
positive regulation of gene expression	Orthology	biological process
gamete generation	Orthology	biological process
immune system process	Orthology	biological process

GO (Orthology)

37 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
chromatin silencing at rDNA	Hs	biological process
nuclear chromosome	Hs	cellular component
nuclear chromosome, telomeric region	Hs	cellular component
nucleosome	Hs	cellular component
nuclear nucleosome	Hs	cellular component
RNA polymerase II core promoter sequence-specific DNA binding	Hs	molecular function
RNA polymerase II distal enhancer sequence-specific DNA binding	Hs	molecular function
osteoblast differentiation	Hs	biological process
Barr body	Hs	cellular component
DNA binding	Hs	molecular function
protein binding	Hs	molecular function
extracellular region	Hs	cellular component
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
chromosome	Hs	cellular component
nucleosome assembly	Hs	biological process
DNA replication-independent nucleosome assembly	Hs	biological process
nucleus organization	Hs	biological process
spermatogenesis	Hs	biological process
spermatid development	Hs	biological process
single fertilization	Hs	biological process
blood coagulation	Hs	biological process
cell proliferation	Hs	biological process
male gonad development	Hs	biological process
positive regulation of cell growth	Hs	biological process
nucleosomal DNA binding	Hs	molecular function
telomere organization	Hs	biological process
macromolecular complex	Hs	cellular component
multicellular organism growth	Hs	biological process
muscle cell differentiation	Hs	biological process
negative regulation of gene expression, epigenetic	Hs	biological process
positive regulation of gene expression, epigenetic	Hs	biological process
protein heterodimerization activity	Hs	molecular function
oogenesis	Hs	biological process
regulation of gene silencing by miRNA	Hs	biological process
extracellular exosome	Hs	cellular component
regulation of hematopoietic stem cell differentiation	Hs	biological process

GO (Blast)

17 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
nuclear chromosome	Hs	cellular component	273	1.01e-95
nuclear chromosome, telomeric region	Hs	cellular component	273	1.01e-95
nucleosome	Hs	cellular component	273	1.01e-95
nuclear nucleosome	Hs	cellular component	273	1.01e-95
RNA polymerase II core promoter sequence-specific DNA binding	Hs	molecular function	273	1.01e-95
RNA polymerase II distal enhancer sequence-specific DNA binding	Hs	molecular function	273	1.01e-95
Barr body	Hs	cellular component	273	1.01e-95
DNA binding	Hs	molecular function	273	1.01e-95
protein binding	Hs	molecular function	273	1.01e-95
extracellular region	Hs	cellular component	273	1.01e-95
nucleus	Hs	cellular component	273	1.01e-95
nucleoplasm	Hs	cellular component	273	1.01e-95
chromosome	Hs	cellular component	273	1.01e-95
nucleosomal DNA binding	Hs	molecular function	273	1.01e-95
macromolecular complex	Hs	cellular component	273	1.01e-95
protein heterodimerization activity	Hs	molecular function	273	1.01e-95
extracellular exosome	Hs	cellular component	273	1.01e-95

GO (InterProScan)