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Gene Card

Best human hits

FABP3; FABP4; FABP7

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00003029

Gene Model ID

KH2012:KH.C12.472

Location

KhC12:1719324..1721164

Transcript Models and Sequences

  KH2012:KH.C12.472.v1.A.SL1-1
KH2012:KH.C12.472.v2.A.SL1-1

External Database Gene Card

External database links

1 result

Database Gene ID
NCBI Reference Sequence XM_002127790.4
Collections

Gateway full ORF

2 results

cima81820

Plate: VES56_D10

cima839616

Plate: VES63_L16

Gene collection 1 (N. Satoh)

1 result

citb3a1

Plate: R1CiGC28j24

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term Analysis Definition
Calycin SUPERFAMILY Calycin
Calycin Gene3D Calycin
ILBP PANTHER Intracellular lipid binding protein
Fatty_acid-bd ProSitePatterns Cytosolic fatty-acid binding
Lipocln_cytosolic_FA-bd_dom Pfam Lipocalin/cytosolic fatty-acid binding domain
Fatty_acid-bd PRINTS Cytosolic fatty-acid binding

GOSlim

51 results

GO Term Annotation Origin Type
protein binding Orthology molecular function
extracellular space Orthology cellular component
nucleus Orthology cellular component
cytoplasm Orthology cellular component
cytosol Orthology cellular component
nervous system development Orthology biological process
cytoskeletal protein binding Orthology molecular function
negative regulation of cell proliferation Orthology biological process
neurogenesis Orthology biological process
cell projection Orthology cellular component
neuronal cell body Orthology cellular component
cell body Orthology cellular component
negative regulation of transcription, DNA-templated Orthology biological process
extracellular exosome Orthology cellular component
cell periphery Orthology cellular component
extracellular region Orthology cellular component
nucleoplasm Orthology cellular component
plasma membrane Orthology cellular component
myelin sheath Orthology cellular component
membrane organization Orthology biological process
nervous system process Orthology biological process
organic substance transport Orthology biological process
ion transport Orthology biological process
small molecule binding Orthology molecular function
anion binding Orthology molecular function
intracellular non-membrane-bounded organelle Orthology cellular component
cell junction Orthology cellular component
regulation of catalytic activity Orthology biological process
protein kinase activity Orthology molecular function
cellular metabolic process Orthology biological process
organic substance metabolic process Orthology biological process
binding Orthology molecular function
cell proliferation Orthology biological process
brain development Orthology biological process
response to organic substance Orthology biological process
defense response Orthology biological process
cell differentiation Orthology biological process
cytoplasmic vesicle Orthology cellular component
endomembrane system Orthology cellular component
spermatogenesis Orthology biological process
cell development Orthology biological process
cellular biosynthetic process Orthology biological process
phosphate-containing compound metabolic process Orthology biological process
anatomical structure development Orthology biological process
organic cyclic compound binding Orthology molecular function
intracellular organelle part Orthology cellular component
whole membrane Orthology cellular component
bounding membrane of organelle Orthology cellular component
lysosome Orthology cellular component
vacuolar part Orthology cellular component
intracellular organelle lumen Orthology cellular component

GO (Orthology)

55 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
cytokine production Hs biological process
startle response Hs biological process
long-chain fatty acid transporter activity Hs molecular function
fatty acid binding Hs molecular function
protein binding Hs molecular function
extracellular space Hs cellular component
nucleus Hs cellular component
cytoplasm Hs cellular component
lipid droplet Hs cellular component
cytosol Hs cellular component
cell-cell junction Hs cellular component
negative regulation of protein kinase activity Hs biological process
fatty acid metabolic process Hs biological process
nervous system development Hs biological process
cytoskeletal protein binding Hs molecular function
negative regulation of cell proliferation Hs biological process
lipid binding Hs molecular function
long-chain fatty acid transport Hs biological process
sarcoplasm Hs cellular component
triglyceride catabolic process Hs biological process
cell proliferation in forebrain Hs biological process
neurogenesis Hs biological process
response to insulin Hs biological process
long-chain fatty acid binding Hs molecular function
response to drug Hs biological process
cholesterol homeostasis Hs biological process
cell projection Hs cellular component
neuronal cell body Hs cellular component
cell body Hs cellular component
long-chain fatty acid import Hs biological process
negative regulation of transcription, DNA-templated Hs biological process
icosatetraenoic acid binding Hs molecular function
epithelial cell proliferation Hs biological process
regulation of inflammatory response Hs biological process
positive regulation of inflammatory response Hs biological process
brown fat cell differentiation Hs biological process
phospholipid homeostasis Hs biological process
extracellular exosome Hs cellular component
oleic acid binding Hs molecular function
cellular response to tumor necrosis factor Hs biological process
cell periphery Hs cellular component
acrosomal vesicle Hs cellular component
acrosome assembly Hs biological process
extracellular region Hs cellular component
nucleoplasm Hs cellular component
plasma membrane Hs cellular component
glucose metabolic process Hs biological process
lipid metabolic process Hs biological process
phosphatidylcholine biosynthetic process Hs biological process
epidermis development Hs biological process
cholesterol binding Hs molecular function
secretory granule membrane Hs cellular component
azurophil granule lumen Hs cellular component
myelin sheath Hs cellular component
membrane organization Hs biological process

GO (Blast)

20 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
long-chain fatty acid transporter activity Hs molecular function 123 2.52e-37
fatty acid binding Hs molecular function 124 1.15e-37
protein binding Hs molecular function 123 2.52e-37
extracellular space Hs cellular component 123 2.52e-37
nucleus Hs cellular component 130 1.20e-39
cytoplasm Hs cellular component 130 1.20e-39
lipid droplet Hs cellular component 124 1.15e-37
cytosol Hs cellular component 130 1.20e-39
cell-cell junction Hs cellular component 130 1.20e-39
cytoskeletal protein binding Hs molecular function 123 2.52e-37
lipid binding Hs molecular function 130 1.20e-39
sarcoplasm Hs cellular component 123 2.52e-37
long-chain fatty acid binding Hs molecular function 123 2.52e-37
cell projection Hs cellular component 130 1.20e-39
neuronal cell body Hs cellular component 130 1.20e-39
cell body Hs cellular component 130 1.20e-39
icosatetraenoic acid binding Hs molecular function 123 2.52e-37
extracellular exosome Hs cellular component 124 1.15e-37
oleic acid binding Hs molecular function 123 2.52e-37
cell periphery Hs cellular component 130 1.20e-39

GO (InterProScan)

1 result

GO Term Analysis Type e-value
lipid binding PANTHER molecular function 7.7E-61

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