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Gene Card

Best human hits

BMP3; BMP4; GDF10

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00003050

Gene Model ID

KH2012:KH.C12.491

Location

KhC12:4643944..4648723

Transcript Models and Sequences

  KH2012:KH.C12.491.v1.A.SL1-1

External Database Gene Card

External database links

3 results

Database Gene ID
ENSEMBL ENSCING00000006362
NCBI Reference Sequence NM_001078519.1
NCBI Reference Sequence XM_018814213.1
Collections

Gateway full ORF

1 result

cien94158

Plate: VES85_E03

Gene collection 1 (N. Satoh)

1 result

citb038j20

Plate: R1CiGC32h17

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

8 results

IPR Term Analysis Definition
Cystine-knot_cytokine SUPERFAMILY Cystine-knot cytokine
Cystine-knot_cytokine Gene3D Cystine-knot cytokine
TGFb_CS ProSitePatterns Transforming growth factor beta, conserved site
TGF-beta-rel PANTHER Transforming growth factor-beta-related
TGF-b_C SMART Transforming growth factor-beta, C-terminal
TGF-b_C ProSiteProfiles Transforming growth factor-beta, C-terminal
TGF-b_propeptide Pfam TGF-beta, propeptide
TGF-b_C Pfam Transforming growth factor-beta, C-terminal

GOSlim

28 results

GO Term Annotation Origin Type
receptor binding Orthology molecular function
protein binding Blast molecular function
extracellular region Orthology cellular component
extracellular space Orthology cellular component
endoplasmic reticulum lumen Blast cellular component
cell-cell signaling Orthology biological process
multicellular organism development Orthology biological process
cell differentiation Orthology biological process
regulation of apoptotic process Orthology biological process
cell development Orthology biological process
extracellular exosome Orthology cellular component
system development Orthology biological process
molecular function regulator Orthology molecular function
regulation of signal transduction Orthology biological process
signaling receptor activity Orthology molecular function
cell surface receptor signaling pathway Orthology biological process
cellular response to organic substance Orthology biological process
regulation of molecular function Orthology biological process
positive regulation of signal transduction Orthology biological process
protein phosphorylation Orthology biological process
regulation of transcription from RNA polymerase II promoter Orthology biological process
extracellular region part Orthology cellular component
intracellular signal transduction Orthology biological process
regulation of cellular metabolic process Orthology biological process
animal organ development Orthology biological process
anion binding Blast molecular function
carbohydrate derivative binding Blast molecular function
chemotaxis Blast biological process

GO (Orthology)

26 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
skeletal system development Hs biological process
ossification Hs biological process
osteoblast differentiation Hs biological process
receptor binding Hs molecular function
cytokine activity Hs molecular function
transforming growth factor beta receptor binding Hs molecular function
extracellular region Hs cellular component
extracellular space Hs cellular component
transforming growth factor beta receptor signaling pathway Hs biological process
cell-cell signaling Hs biological process
multicellular organism development Hs biological process
growth factor activity Hs molecular function
regulation of receptor activity Hs biological process
positive regulation of pathway-restricted SMAD protein phosphorylation Hs biological process
cell differentiation Hs biological process
BMP signaling pathway Hs biological process
extracellular matrix Hs cellular component
regulation of apoptotic process Hs biological process
regulation of MAPK cascade Hs biological process
fat cell differentiation Hs biological process
negative regulation of osteoblast differentiation Hs biological process
cell development Hs biological process
cartilage development Hs biological process
SMAD protein signal transduction Hs biological process
extracellular exosome Hs cellular component
BMP receptor binding Hs molecular function

GO (Blast)

15 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
receptor binding Hs molecular function 156 3.51e-41
cytokine activity Hs molecular function 156 3.51e-41
transforming growth factor beta receptor binding Hs molecular function 156 3.51e-41
protein binding Hs molecular function 122 9.14e-30
extracellular region Hs cellular component 156 3.51e-41
proteinaceous extracellular matrix Hs cellular component 122 9.14e-30
extracellular space Hs cellular component 156 3.51e-41
endoplasmic reticulum lumen Hs cellular component 122 9.14e-30
growth factor activity Hs molecular function 156 3.51e-41
heparin binding Hs molecular function 122 9.14e-30
extracellular matrix Hs cellular component 152 6.04e-40
co-receptor binding Hs molecular function 122 9.14e-30
chemoattractant activity Hs molecular function 122 9.14e-30
extracellular exosome Hs cellular component 156 3.51e-41
BMP receptor binding Hs molecular function 156 3.51e-41

GO (InterProScan)

1 result

GO Term Analysis Type e-value
growth factor activity SMART molecular function 1.8E-45

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