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GENE CARD

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Gene Card

Best human hits

DHX16; DHX8

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00003352

Gene Model ID

KH2012:KH.C13.137

Location

KhC13:1664128..1668452

Transcript Models and Sequences

  KH2012:KH.C13.137.v1.A.SL1-1

External Database Gene Card

External database links

1 result

Database Gene ID
ENSEMBL ENSCING00000001546
Collections

Gateway full ORF

2 results

cien105702

Plate: VES86_C20

cien47979

Plate: VES77_D19

Gene collection 1 (N. Satoh)

1 result

citb1h12

Plate: R1CiGC28h09

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

16 results

IPR Term Analysis Definition
Helicase_ATP-bd ProSiteProfiles Helicase superfamily 1/2, ATP-binding domain
S1_domain ProSiteProfiles S1 domain
Helicase_C ProSiteProfiles Helicase, C-terminal
DEAD/DEAH_box_helicase_dom Pfam DEAD/DEAH box helicase domain
Helicase-assoc_dom SMART Helicase-associated domain
DNA/RNA_helicase_DEAH_CS ProSitePatterns DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site
NA-bd_OB-fold SUPERFAMILY Nucleic acid-binding, OB-fold
Helicase_ATP-bd SMART Helicase superfamily 1/2, ATP-binding domain
Helicase_C Pfam Helicase, C-terminal
Helicase_C SMART Helicase, C-terminal
Helicase_C CDD Helicase, C-terminal
S1_dom SMART RNA-binding domain, S1
Helicase-assoc_dom Pfam Helicase-associated domain
P-loop_NTPase SUPERFAMILY P-loop containing nucleoside triphosphate hydrolase
DUF1605 Pfam Domain of unknown function DUF1605
S1_domain Pfam S1 domain

GOSlim

18 results

GO Term Annotation Origin Type
nucleotide binding Orthology molecular function
mRNA splicing, via spliceosome Orthology biological process
nucleic acid binding Orthology molecular function
RNA binding Orthology molecular function
protein binding Orthology molecular function
ATP binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
cytoplasm Orthology cellular component
RNA processing Orthology biological process
mRNA processing Orthology biological process
RNA splicing Orthology biological process
nuclear body Orthology cellular component
hydrolase activity Orthology molecular function
identical protein binding Orthology molecular function
nucleoside-triphosphatase activity Orthology molecular function
nuclear part Orthology cellular component
macromolecular complex Orthology cellular component

GO (Orthology)

20 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
nucleotide binding Hs molecular function
mRNA splicing, via spliceosome Hs biological process
nucleic acid binding Hs molecular function
RNA binding Hs molecular function
ATP-dependent RNA helicase activity Hs molecular function
helicase activity Hs molecular function
protein binding Hs molecular function
ATP binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
spliceosomal complex Hs cellular component
cytoplasm Hs cellular component
RNA processing Hs biological process
mRNA processing Hs biological process
RNA splicing Hs biological process
nuclear body Hs cellular component
hydrolase activity Hs molecular function
identical protein binding Hs molecular function
U2-type catalytic step 2 spliceosome Hs cellular component
catalytic step 2 spliceosome Hs cellular component

GO (Blast)

18 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
nucleotide binding Hs molecular function 1643 0.0
nucleic acid binding Hs molecular function 1643 0.0
RNA binding Hs molecular function 1643 0.0
RNA helicase activity Hs molecular function 792 0.0
ATP-dependent RNA helicase activity Hs molecular function 1643 0.0
helicase activity Hs molecular function 1643 0.0
protein binding Hs molecular function 1643 0.0
ATP binding Hs molecular function 1643 0.0
nucleus Hs cellular component 1643 0.0
nucleoplasm Hs cellular component 1643 0.0
spliceosomal complex Hs cellular component 1643 0.0
cytoplasm Hs cellular component 1643 0.0
nuclear body Hs cellular component 1643 0.0
hydrolase activity Hs molecular function 1643 0.0
ATPase activity Hs molecular function 792 0.0
identical protein binding Hs molecular function 1643 0.0
U2-type catalytic step 2 spliceosome Hs cellular component 1643 0.0
catalytic step 2 spliceosome Hs cellular component 1643 0.0

GO (InterProScan)

3 results

GO Term Analysis Type e-value
nucleic acid binding Pfam molecular function 1.5E-13
helicase activity SMART molecular function 2.1E-37
ATP binding Pfam molecular function 3.6E-8

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