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GENE CARD

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Gene Card

Best human hits

C6; C8A; C9

Unique Gene ID

Cirobu.g00003815

Gene Model ID

KH2012:KH.C14.386

Location

KhC14:764210..769901

Transcript Models and Sequences

  KH2012:KH.C14.386.v1.A.ND1-1

External Database Gene Card
Collections

Gateway full ORF

2 results

cima815120

Plate: VES58_E20

cima885467

Plate: VES69_O17

Gene collection 1 (N. Satoh)

1 result

ciad016m22

Plate: R1CiGC02b14

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

18 results

IPR Term Analysis Definition
MACPF_CS ProSitePatterns Membrane attack complex component/perforin domain, conserved site
LDrepeatLR_classA_rpt CDD Low-density lipoprotein (LDL) receptor class A repeat
LDL_receptor-like_sf SUPERFAMILY LDL receptor-like superfamily
MACPF ProSiteProfiles Membrane attack complex component/perforin (MACPF) domain
TSP1_rpt_sf Gene3D Thrombospondin type-1 (TSP1) repeat superfamily
LDrepeatLR_classA_rpt ProSiteProfiles Low-density lipoprotein (LDL) receptor class A repeat
TSP1_rpt Pfam Thrombospondin type-1 (TSP1) repeat
MAC_perforin PRINTS Membrane attack complex component/perforin/complement C9
TSP1_rpt ProSiteProfiles Thrombospondin type-1 (TSP1) repeat
TSP1_rpt_sf SUPERFAMILY Thrombospondin type-1 (TSP1) repeat superfamily
LDrepeatLR_classA_rpt Pfam Low-density lipoprotein (LDL) receptor class A repeat
MACPF SMART Membrane attack complex component/perforin (MACPF) domain
LDLR_class-A_CS ProSitePatterns Low-density lipoprotein (LDL) receptor class A, conserved site
MACPF Pfam Membrane attack complex component/perforin (MACPF) domain
TSP1_rpt SMART Thrombospondin type-1 (TSP1) repeat
LDrepeatLR_classA_rpt SMART Low-density lipoprotein (LDL) receptor class A repeat
EGF-like_CS ProSitePatterns EGF-like, conserved site
EGF-like_dom ProSiteProfiles EGF-like domain

GOSlim

11 results

GO Term Annotation Origin Type
protein binding Blast molecular function
extracellular region Blast cellular component
extracellular space Blast cellular component
cytosol Blast cellular component
plasma membrane Blast cellular component
integral component of plasma membrane Blast cellular component
immune response InterProScan biological process
membrane Blast cellular component
integral component of membrane Blast cellular component
extracellular exosome Blast cellular component
macromolecular complex Blast cellular component

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type

GO (Blast)

14 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
complement binding Hs molecular function 213 1.62e-61
protein binding Hs molecular function 284 2.54e-85
extracellular region Hs cellular component 284 2.54e-85
membrane attack complex Hs cellular component 284 2.54e-85
extracellular space Hs cellular component 213 1.62e-61
cytosol Hs cellular component 192 4.77e-54
plasma membrane Hs cellular component 213 1.62e-61
integral component of plasma membrane Hs cellular component 192 4.77e-54
membrane Hs cellular component 213 1.62e-61
integral component of membrane Hs cellular component 213 1.62e-61
other organism cell membrane Hs cellular component 192 4.77e-54
other organism membrane Hs cellular component 192 4.77e-54
extracellular exosome Hs cellular component 284 2.54e-85
blood microparticle Hs cellular component 213 1.62e-61

GO (InterProScan)

3 results

GO Term Analysis Type e-value
protein binding Pfam molecular function 5.8E-10
membrane attack complex PRINTS cellular component 2.1E-21
immune response PRINTS biological process 2.1E-21