- Gene 'KH2012:KH.C2.15'
Gene Card
Best human hits
EXOSC1; EXOSC2
Unique Gene ID
Cirobu.g00004321
Gene Model ID
KH2012:KH.C2.15
Location
KhC2:423837..424890
Transcript Models and Sequences
External database links
2 results
| Database | Gene ID |
|---|---|
| ENSEMBL | ENSCING00000022734 |
| NCBI Reference Sequence | XM_002122006.4 |
Gateway full ORF
2 results
cima833972
Plate: VES62_E16
cien190847
Plate: VES99_A21
Gene collection 1 (N. Satoh)
1 result
cicl047e04
Plate: R1CiGC13m02
n/a
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The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.
Click here to see the tree inference method
InterPro
3 results
| IPR Term | Analysis | Definition |
|---|---|---|
| Exosome_cplx_N_dom | Pfam | Exosome complex component, N-terminal domain |
| NA-bd_OB-fold | SUPERFAMILY | Nucleic acid-binding, OB-fold |
| EXOSC1 | Pfam | Exosome complex component CSL4 |
GOSlim
16 results
| GO Term | Annotation Origin | Type |
|---|---|---|
| RNA binding | Orthology | molecular function |
| protein binding | Orthology | molecular function |
| nucleus | Orthology | cellular component |
| nucleoplasm | Orthology | cellular component |
| nucleolus | Orthology | cellular component |
| cytoplasm | Orthology | cellular component |
| cytosol | Orthology | cellular component |
| nuclear lumen | Orthology | cellular component |
| macromolecular complex | Orthology | cellular component |
| intracellular part | Orthology | cellular component |
| RNA processing | Orthology | biological process |
| mRNA catabolic process | Orthology | biological process |
| nuclear-transcribed mRNA catabolic process | Orthology | biological process |
| RNA metabolic process | Blast | biological process |
| hydrolase activity | Blast | molecular function |
| cytoplasmic part | Blast | cellular component |
GO (Orthology)
12 results
| GO Term | SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae |
Type |
|---|---|---|
| nuclear exosome (RNase complex) | Hs | cellular component |
| exosome (RNase complex) | Hs | cellular component |
| RNA binding | Hs | molecular function |
| protein binding | Hs | molecular function |
| nucleus | Hs | cellular component |
| nucleoplasm | Hs | cellular component |
| nucleolus | Hs | cellular component |
| cytoplasm | Hs | cellular component |
| cytosol | Hs | cellular component |
| rRNA processing | Hs | biological process |
| regulation of mRNA stability | Hs | biological process |
| exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay | Hs | biological process |
GO (Blast)
12 results
| GO Term | SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae |
Type | Score | E-value |
|---|---|---|---|---|
| 3'-5'-exoribonuclease activity | Hs | molecular function | 40.8 | 2.70e-04 |
| nuclear exosome (RNase complex) | Hs | cellular component | 207 | 1.39e-68 |
| cytoplasmic exosome (RNase complex) | Hs | cellular component | 40.8 | 2.70e-04 |
| exosome (RNase complex) | Hs | cellular component | 207 | 1.39e-68 |
| RNA binding | Hs | molecular function | 207 | 1.39e-68 |
| protein binding | Hs | molecular function | 207 | 1.39e-68 |
| nucleus | Hs | cellular component | 207 | 1.39e-68 |
| nucleoplasm | Hs | cellular component | 207 | 1.39e-68 |
| nucleolus | Hs | cellular component | 207 | 1.39e-68 |
| cytoplasm | Hs | cellular component | 207 | 1.39e-68 |
| cytosol | Hs | cellular component | 207 | 1.39e-68 |
| 7S RNA binding | Hs | molecular function | 40.8 | 2.70e-04 |
GO (InterProScan)
2 results
| GO Term | Analysis | Type | e-value |
|---|---|---|---|
| exosome (RNase complex) | Pfam | cellular component | 3.1E-12 |
| RNA binding | Pfam | molecular function | 3.1E-12 |
