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Gene Card

Best human hits

LRRC74A; LRRC74B; NLRC3

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00004325

Gene Model ID

KH2012:KH.C2.153

Location

KhC2:4888920..4895542

Transcript Models and Sequences

  KH2012:KH.C2.153.v1.A.ND2-1
KH2012:KH.C2.153.v1.A.SL1-1

External Database Gene Card

External database links

3 results

Database Gene ID
ENSEMBL ENSCING00000006326
NCBI Reference Sequence XM_002119199.3
NCBI Reference Sequence XM_009859365.1
Collections

Gateway full ORF

2 results

cien107995

Plate: VES87_I04

cien63548

Plate: VES80_E06

Gene collection 1 (N. Satoh)

2 results

cicl042c05

Plate: R1CiGC12l23

ciad039e07

Plate: R1CiGC04g02

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

7 results

IPR Term Analysis Definition
Leu-rich_rpt Pfam Leucine-rich repeat
EF_Hand_1_Ca_BS ProSitePatterns EF-Hand 1, calcium-binding site
EF_hand_dom ProSiteProfiles EF-hand domain
EF_hand_dom CDD EF-hand domain
EF_hand_dom SMART EF-hand domain
LRR_dom_sf Gene3D Leucine-rich repeat domain superfamily
EF-hand-dom_pair SUPERFAMILY EF-hand domain pair

GOSlim

8 results

GO Term Annotation Origin Type
nucleotide binding Blast molecular function
protein binding Orthology molecular function
ATP binding Blast molecular function
cytoplasm Blast cellular component
microtubule organizing center Blast cellular component
cytosol Blast cellular component
perinuclear region of cytoplasm Blast cellular component
calcium ion binding InterProScan molecular function

GO (Orthology)

1 result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
protein binding Hs molecular function

GO (Blast)

8 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
nucleotide binding Hs molecular function 112 8.20e-26
protein binding Hs molecular function 298 1.87e-95
ATP binding Hs molecular function 112 8.20e-26
cytoplasm Hs cellular component 112 8.20e-26
microtubule organizing center Hs cellular component 112 8.20e-26
cytosol Hs cellular component 112 8.20e-26
phosphatidylinositol 3-kinase regulatory subunit binding Hs molecular function 112 8.20e-26
perinuclear region of cytoplasm Hs cellular component 112 8.20e-26

GO (InterProScan)

2 results

GO Term Analysis Type e-value
protein binding Pfam molecular function 6.1E-4
calcium ion binding CDD molecular function 3.23286E-10

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