Aniseed - Gene card

Gene Card

Best human hits

NR1H3; NR1H4; THRB

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00004334

Gene Model ID

KH2012:KH.C2.161

Location

KhC2:5033578..5040487

Transcript Models and Sequences

KH2012:KH.C2.161.v1.A.ND8-1
KH2012:KH.C2.161.v1.A.nonSL10-1
KH2012:KH.C2.161.v1.A.nonSL11-1
KH2012:KH.C2.161.v1.A.nonSL13-1
KH2012:KH.C2.161.v1.A.nonSL15-1
KH2012:KH.C2.161.v1.A.nonSL2-1
KH2012:KH.C2.161.v1.A.nonSL4-1
KH2012:KH.C2.161.v1.R.nonSL1-1
KH2012:KH.C2.161.v2.A.nonSL6-1
KH2012:KH.C2.161.v2.A.nonSL7-1
KH2012:KH.C2.161.v2.R.nonSL3-1
KH2012:KH.C2.161.v3.A.ND5-1
KH2012:KH.C2.161.v3.A.SL12-1
KH2012:KH.C2.161.v3.A.SL14-1
KH2012:KH.C2.161.v4.A.ND9-1

External Database Gene Card

External database links

3 results

Database	Gene ID
ENSEMBL	ENSCING00000003634
NCBI Reference Sequence	NM_001093737.1
NCBI Reference Sequence	XM_009859214.2

Collections

Gene collection 1 (N. Satoh)

1 result

citb033o05

Plate: R1CiGC32a21

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

11 results

IPR Term	Analysis	Definition
Nucl_hrmn_rcpt_lig-bd	Pfam	Nuclear hormone receptor, ligand-binding domain
Znf_hrmn_rcpt	ProSitePatterns	Zinc finger, nuclear hormone receptor-type
Nucl_hrmn_rcpt_lig-bd	SMART	Nuclear hormone receptor, ligand-binding domain
Znf_hrmn_rcpt	PRINTS	Zinc finger, nuclear hormone receptor-type
Znf_hrmn_rcpt	SMART	Zinc finger, nuclear hormone receptor-type
Znf_NHR/GATA	Gene3D	Zinc finger, NHR/GATA-type
NHR_like_dom_sf	SUPERFAMILY	Nuclear hormone receptor-like domain superfamily
Nuclear_hrmn_rcpt	PRINTS	Nuclear hormone receptor
Znf_hrmn_rcpt	Pfam	Zinc finger, nuclear hormone receptor-type
Znf_hrmn_rcpt	ProSiteProfiles	Zinc finger, nuclear hormone receptor-type
ThyrH_rcpt	PRINTS	Thyroid hormone receptor

GOSlim

33 results

GO Term	Annotation Origin	Type
RNA polymerase II regulatory region sequence-specific DNA binding	Blast	molecular function
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Blast	molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Blast	molecular function
DNA binding	Blast	molecular function
transcription factor activity, sequence-specific DNA binding	Blast	molecular function
transcription coactivator activity	Blast	molecular function
transcription corepressor activity	Blast	molecular function
protein binding	Blast	molecular function
nucleus	Blast	cellular component
nucleoplasm	Blast	cellular component
regulation of transcription, DNA-templated	InterProScan	biological process
signal transduction	Blast	biological process
zinc ion binding	Blast	molecular function
nuclear body	Blast	cellular component
enzyme binding	Blast	molecular function
sequence-specific DNA binding	Blast	molecular function
transcription regulatory region DNA binding	Blast	molecular function
metal ion binding	Blast	molecular function
extracellular exosome	Blast	cellular component
intracellular non-membrane-bounded organelle	Blast	cellular component
nuclear lumen	Blast	cellular component
response to lipid	Blast	biological process
signaling receptor activity	Blast	molecular function
cellular response to organic substance	Blast	biological process
small molecule binding	Blast	molecular function
organic cyclic compound binding	Blast	molecular function
receptor binding	Blast	molecular function
transcription factor binding	Blast	molecular function
chromatin binding	Blast	molecular function
anion binding	Blast	molecular function
macromolecular complex	Blast	cellular component
binding	Blast	molecular function
nuclear part	Blast	cellular component

GO (Orthology)

No result

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type

GO (Blast)

37 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
nuclear chromatin	Hs	cellular component	162	2.26e-44
RNA polymerase II regulatory region sequence-specific DNA binding	Hs	molecular function	295	1.86e-94
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Hs	molecular function	162	2.26e-44
RNA polymerase II distal enhancer sequence-specific DNA binding	Hs	molecular function	295	1.86e-94
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function	295	1.86e-94
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding	Hs	molecular function	295	1.86e-94
transcriptional activator activity, RNA polymerase II transcription factor binding	Hs	molecular function	295	1.86e-94
DNA binding	Hs	molecular function	295	1.86e-94
transcription factor activity, sequence-specific DNA binding	Hs	molecular function	295	1.86e-94
transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding	Hs	molecular function	295	1.86e-94
steroid hormone receptor activity	Hs	molecular function	295	1.86e-94
transcription coactivator activity	Hs	molecular function	295	1.86e-94
transcription corepressor activity	Hs	molecular function	295	1.86e-94
nuclear receptor activity	Hs	molecular function	295	1.86e-94
thyroid hormone receptor activity	Hs	molecular function	295	1.86e-94
protein binding	Hs	molecular function	295	1.86e-94
nucleus	Hs	cellular component	295	1.86e-94
nucleoplasm	Hs	cellular component	295	1.86e-94
nuclear euchromatin	Hs	cellular component	295	1.86e-94
zinc ion binding	Hs	molecular function	295	1.86e-94
cholesterol binding	Hs	molecular function	162	2.26e-44
nuclear body	Hs	cellular component	160	2.30e-43
ligand-dependent nuclear receptor binding	Hs	molecular function	295	1.86e-94
enzyme binding	Hs	molecular function	160	2.30e-43
chromatin DNA binding	Hs	molecular function	160	2.30e-43
bile acid binding	Hs	molecular function	295	1.86e-94
sterol response element binding	Hs	molecular function	162	2.26e-44
bile acid receptor activity	Hs	molecular function	295	1.86e-94
receptor complex	Hs	cellular component	162	2.26e-44
sequence-specific DNA binding	Hs	molecular function	295	1.86e-94
transcription regulatory region DNA binding	Hs	molecular function	162	2.26e-44
metal ion binding	Hs	molecular function	295	1.86e-94
retinoid X receptor binding	Hs	molecular function	295	1.86e-94
extracellular exosome	Hs	cellular component	160	2.30e-43
thyroid hormone binding	Hs	molecular function	160	2.30e-43
RNA polymerase II transcription factor complex	Hs	cellular component	162	2.26e-44
chenodeoxycholic acid binding	Hs	molecular function	295	1.86e-94

GO (InterProScan)

9 results

GO Term	Analysis	Type	e-value
DNA binding	PRINTS	molecular function	2.6E-20
transcription factor activity, sequence-specific DNA binding	Pfam	molecular function	2.2E-23
steroid hormone receptor activity	PRINTS	molecular function	2.6E-20
thyroid hormone receptor activity	PRINTS	molecular function	1.0E-6
nucleus	Pfam	cellular component	2.2E-23
regulation of transcription, DNA-templated	SMART	biological process	5.2E-33
zinc ion binding	Gene3D	molecular function	5.6E-25
steroid hormone mediated signaling pathway	SMART	biological process	5.2E-33
sequence-specific DNA binding	Pfam	molecular function	2.2E-23