Aniseed - Gene card

Gene Card

Best human hits

CELF2; CELF3; CELF5

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00004450

Gene Model ID

KH2012:KH.C2.269

Location

KhC2:5212134..5221383

Transcript Models and Sequences

KH2012:KH.C2.269.v1.A.SL2-1
KH2012:KH.C2.269.v2.A.ND1-1

External Database Gene Card

External database links

3 results

Database	Gene ID
ENSEMBL	ENSCING00000003762
NCBI Reference Sequence	XM_002121591.4
NCBI Reference Sequence	XM_018817705.1

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

cibd007g24

Plate: R1CiGC37b19

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

7 results

IPR Term	Analysis	Definition
Nucleotide-bd_a/b_plait_sf	Gene3D	Nucleotide-binding alpha-beta plait domain superfamily
Hud_Sxl_RNA	PRINTS	Paraneoplastic encephalomyelitis antigen
RRM_dom	ProSiteProfiles	RNA recognition motif domain
RBD_domain_sf	SUPERFAMILY	RNA-binding domain superfamily
RRM_dom	Pfam	RNA recognition motif domain
RRM_dom	SMART	RNA recognition motif domain
CELF1/2_RRM1	CDD	CELF1/2, RNA recognition motif 1

GOSlim

20 results

GO Term	Annotation Origin	Type
nucleic acid binding	Orthology	molecular function
RNA binding	Orthology	molecular function
nucleus	Orthology	cellular component
cytoplasm	Orthology	cellular component
RNA processing	Orthology	biological process
mRNA processing	Orthology	biological process
spermatogenesis	Orthology	biological process
RNA splicing	Orthology	biological process
nuclear body	Blast	cellular component
protein binding	Orthology	molecular function
nucleoplasm	Orthology	cellular component
membrane	Orthology	cellular component
mRNA splicing, via spliceosome	Orthology	biological process
negative regulation of gene expression	Orthology	biological process
gamete generation	Orthology	biological process
cell development	Orthology	biological process
multicellular organism development	Orthology	biological process
cellular process	Orthology	biological process
developmental process	Orthology	biological process
regulation of gene expression	Orthology	biological process

GO (Orthology)

25 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
nucleic acid binding	Hs	molecular function
RNA binding	Hs	molecular function
nucleus	Hs	cellular component
cytoplasm	Hs	cellular component
mRNA splice site selection	Hs	biological process
RNA processing	Hs	biological process
mRNA processing	Hs	biological process
regulation of heart contraction	Hs	biological process
RNA splicing	Hs	biological process
pre-mRNA binding	Hs	molecular function
translation repressor activity, nucleic acid binding	Hs	molecular function
mRNA binding	Hs	molecular function
protein binding	Hs	molecular function
nucleoplasm	Hs	cellular component
germ cell development	Hs	biological process
spermatid development	Hs	biological process
embryo development ending in birth or egg hatching	Hs	biological process
membrane	Hs	cellular component
RNA interference	Hs	biological process
negative regulation of translation	Hs	biological process
intracellular ribonucleoprotein complex	Hs	cellular component
translation initiation factor binding	Hs	molecular function
positive regulation of multicellular organism growth	Hs	biological process
BRE binding	Hs	molecular function
regulation of RNA splicing	Hs	biological process

GO (Blast)