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Gene Card

Best human hits

DNAJC27; RAB21; RAB7A

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00004465

Gene Model ID

KH2012:KH.C2.282

Location

KhC2:491293..497439

Transcript Models and Sequences

  KH2012:KH.C2.282.v1.A.ND1-1
KH2012:KH.C2.282.v2.A.ND1-1

External Database Gene Card

External database links

2 results

Database Gene ID
NCBI Reference Sequence NM_001047986.1
NCBI Reference Sequence XM_009859204.2
Collections

Gateway full ORF

2 results

cien92479

Plate: VES84_B19

cien226715

Plate: VES105_F07

Gene collection 1 (N. Satoh)

1 result

cieg041i24

Plate: R1CiGC22k05

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

10 results

IPR Term Analysis Definition
DnaJ_domain Pfam DnaJ domain
DnaJ_domain ProSiteProfiles DnaJ domain
P-loop_NTPase SUPERFAMILY P-loop containing nucleoside triphosphate hydrolase
Small_GTP-bd_dom TIGRFAM Small GTP-binding protein domain
J_dom_sf Gene3D Chaperone J-domain superfamily
DnaJ_domain PRINTS DnaJ domain
Small_GTPase Pfam Small GTPase superfamily
J_dom_sf SUPERFAMILY Chaperone J-domain superfamily
DnaJ_domain CDD DnaJ domain
DnaJ_domain SMART DnaJ domain

GOSlim

48 results

GO Term Annotation Origin Type
Golgi membrane Blast cellular component
nucleotide binding Orthology molecular function
GTPase activity Orthology molecular function
protein binding Orthology molecular function
GTP binding Orthology molecular function
nucleus Orthology cellular component
cytoplasm Blast cellular component
mitochondrion Orthology cellular component
lysosome Blast cellular component
lysosomal membrane Blast cellular component
endosome Blast cellular component
endoplasmic reticulum Blast cellular component
endoplasmic reticulum membrane Blast cellular component
Golgi apparatus Blast cellular component
cytosol Blast cellular component
plasma membrane Blast cellular component
focal adhesion Blast cellular component
membrane Blast cellular component
cytoplasmic vesicle Blast cellular component
neuron projection Blast cellular component
extracellular exosome Blast cellular component
intracellular signal transduction Orthology biological process
positive regulation of signal transduction Orthology biological process
protein phosphorylation Orthology biological process
vacuolar membrane Blast cellular component
Golgi apparatus part Blast cellular component
intracellular non-membrane-bounded organelle Blast cellular component
plasma membrane part Blast cellular component
intracellular organelle part Blast cellular component
whole membrane Blast cellular component
bounding membrane of organelle Blast cellular component
vesicle Blast cellular component
organelle membrane Blast cellular component
anion binding Blast molecular function
guanyl ribonucleotide binding Blast molecular function
purine ribonucleoside binding Blast molecular function
endomembrane system Blast cellular component
membrane part Blast cellular component
macromolecular complex Blast cellular component
early endosome Blast cellular component
plasma membrane region Blast cellular component
melanosome Blast cellular component
cytoplasmic part Blast cellular component
cell projection part Blast cellular component
axon Blast cellular component
synapse part Blast cellular component
enzyme binding Blast molecular function
macromolecular complex binding Blast molecular function

GO (Orthology)

8 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
nucleotide binding Hs molecular function
GTPase activity Hs molecular function
protein binding Hs molecular function
GTP binding Hs molecular function
nucleus Hs cellular component
mitochondrion Hs cellular component
positive regulation of MAPK cascade Hs biological process
positive regulation of ERK1 and ERK2 cascade Hs biological process

GO (Blast)

47 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
Golgi membrane Hs cellular component 110 3.01e-29
nucleotide binding Hs molecular function 374 7.58e-132
autophagosome membrane Hs cellular component 110 1.52e-29
GTPase activity Hs molecular function 374 7.58e-132
protein binding Hs molecular function 374 7.58e-132
GTP binding Hs molecular function 374 7.58e-132
nucleus Hs cellular component 374 7.58e-132
cytoplasm Hs cellular component 110 1.52e-29
mitochondrion Hs cellular component 374 7.58e-132
lysosome Hs cellular component 110 1.52e-29
lysosomal membrane Hs cellular component 110 1.52e-29
endosome Hs cellular component 110 1.52e-29
late endosome Hs cellular component 110 1.52e-29
endoplasmic reticulum Hs cellular component 110 3.01e-29
endoplasmic reticulum membrane Hs cellular component 110 3.01e-29
Golgi apparatus Hs cellular component 110 1.52e-29
trans-Golgi network Hs cellular component 110 3.01e-29
lipid droplet Hs cellular component 110 1.52e-29
cytosol Hs cellular component 110 1.52e-29
plasma membrane Hs cellular component 110 1.52e-29
focal adhesion Hs cellular component 110 3.01e-29
cytoplasmic side of plasma membrane Hs cellular component 110 3.01e-29
endosome membrane Hs cellular component 110 1.52e-29
vesicle membrane Hs cellular component 110 3.01e-29
membrane Hs cellular component 110 1.52e-29
GDP binding Hs molecular function 110 1.52e-29
cytoplasmic vesicle membrane Hs cellular component 110 3.01e-29
secretory granule membrane Hs cellular component 110 1.52e-29
phagocytic vesicle membrane Hs cellular component 110 1.52e-29
retromer complex Hs cellular component 110 1.52e-29
cytoplasmic vesicle Hs cellular component 110 1.52e-29
early endosome membrane Hs cellular component 110 3.01e-29
late endosome membrane Hs cellular component 110 1.52e-29
cleavage furrow Hs cellular component 110 3.01e-29
extrinsic component of lysosome membrane Hs cellular component 110 1.52e-29
Golgi cisterna membrane Hs cellular component 110 3.01e-29
melanosome membrane Hs cellular component 110 1.52e-29
pre-autophagosomal structure membrane Hs cellular component 110 1.52e-29
neuron projection Hs cellular component 110 3.01e-29
terminal bouton Hs cellular component 110 1.52e-29
phagocytic vesicle Hs cellular component 110 1.52e-29
Rac GTPase binding Hs molecular function 110 1.52e-29
extracellular exosome Hs cellular component 110 1.52e-29
alveolar lamellar body Hs cellular component 110 1.52e-29
cytoplasmic side of early endosome membrane Hs cellular component 110 3.01e-29
axon cytoplasm Hs cellular component 110 3.01e-29
retromer complex binding Hs molecular function 110 1.52e-29

GO (InterProScan)

2 results

GO Term Analysis Type e-value
GTPase activity Pfam molecular function 3.4E-41
GTP binding Pfam molecular function 3.4E-41

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