Aniseed - Gene card

GENE CARD

Submit your Data

>

Gene Card

Best human hits

FTSJ1; FTSJ3; MRM2

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00004471

Gene Model ID

KH2012:KH.C2.288

Location

KhC2:1838208..1840996

Transcript Models and Sequences

KH2012:KH.C2.288.v1.A.ND1-1
KH2012:KH.C2.288.v1.A.nonSL3-1
KH2012:KH.C2.288.v1.A.nonSL4-1
KH2012:KH.C2.288.v1.A.nonSL5-1
KH2012:KH.C2.288.v1.A.nonSL6-1
KH2012:KH.C2.288.v1.A.nonSL7-1
KH2012:KH.C2.288.v1.A.nonSL8-1
KH2012:KH.C2.288.v1.A.nonSL9-1
KH2012:KH.C2.288.v1.A.SL2-1
KH2012:KH.C2.288.v2.A.ND1-1
KH2012:KH.C2.288.v2.A.nonSL3-1
KH2012:KH.C2.288.v2.A.nonSL4-1
KH2012:KH.C2.288.v2.A.nonSL5-1
KH2012:KH.C2.288.v2.A.nonSL6-1
KH2012:KH.C2.288.v2.A.nonSL7-1
KH2012:KH.C2.288.v2.A.nonSL8-1
KH2012:KH.C2.288.v2.A.nonSL9-1
KH2012:KH.C2.288.v2.A.SL2-1

External Database Gene Card

External database links

2 results

Database	Gene ID
ENSEMBL	ENSCING00000008473
NCBI Reference Sequence	XM_002127619.2

Collections

Gateway full ORF

2 results

cien103548

Plate: VES86_D12

cien197118

Plate: VES100_P21

Gene collection 1 (N. Satoh)

1 result

citb034m08

Plate: R1CiGC32i15

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.

Click here to see how you can interact with this tree
Click here to see the tree inference method

Gene Annotations

InterPro

5 results

IPR Term	Analysis	Definition
RNA_methyltr_E_Trm7	PANTHER	tRNA (cytidine(32)/guanosine(34)-2-O)-methyltransferase, Trm7
rRNA-MeTfrase_E	Hamap	Ribosomal RNA large subunit methyltransferase E
rRNA_MeTrfase_FtsJ_dom	Pfam	Ribosomal RNA methyltransferase FtsJ domain
SAM-dependent_MTases	SUPERFAMILY	S-adenosyl-L-methionine-dependent methyltransferase
RNA_methyltr_E_Trm7	Hamap	tRNA (cytidine(32)/guanosine(34)-2-O)-methyltransferase, Trm7

GOSlim

13 results

GO Term	Annotation Origin	Type
RNA binding	Blast	molecular function
protein binding	Blast	molecular function
nucleus	Blast	cellular component
nucleolus	Blast	cellular component
cytoplasm	Orthology	cellular component
mitochondrion	Blast	cellular component
mitochondrial matrix	Blast	cellular component
cytosol	Orthology	cellular component
transferase activity	Orthology	molecular function
RNA metabolic process	Orthology	biological process
RNA processing	Orthology	biological process
metabolic process	Orthology	biological process
macromolecular complex	Blast	cellular component

GO (Orthology)

13 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
RNA methylation	Hs	biological process
cytoplasmic translation	Hs	biological process
cytoplasm	Hs	cellular component
cytosol	Hs	cellular component
tRNA modification	Hs	biological process
tRNA processing	Hs	biological process
methyltransferase activity	Hs	molecular function
tRNA methyltransferase activity	Hs	molecular function
tRNA (guanosine-2'-O-)-methyltransferase activity	Hs	molecular function
transferase activity	Hs	molecular function
tRNA methylation	Hs	biological process
methylation	Hs	biological process
tRNA (cytosine-2'-O-)-methyltransferase activity	Hs	molecular function

GO (Blast)

17 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA binding	Hs	molecular function	151	6.27e-41
protein binding	Hs	molecular function	151	6.27e-41
nucleus	Hs	cellular component	151	6.27e-41
nucleolus	Hs	cellular component	151	6.27e-41
cytoplasm	Hs	cellular component	417	3.41e-147
mitochondrion	Hs	cellular component	114	3.28e-30
mitochondrial matrix	Hs	cellular component	114	3.28e-30
cytosol	Hs	cellular component	417	3.41e-147
methyltransferase activity	Hs	molecular function	417	3.41e-147
tRNA methyltransferase activity	Hs	molecular function	417	3.41e-147
rRNA methyltransferase activity	Hs	molecular function	151	6.27e-41
rRNA (uridine-2'-O-)-methyltransferase activity	Hs	molecular function	151	6.27e-41
tRNA (guanosine-2'-O-)-methyltransferase activity	Hs	molecular function	417	3.41e-147
rRNA (guanine) methyltransferase activity	Hs	molecular function	151	6.27e-41
transferase activity	Hs	molecular function	417	3.41e-147
preribosome, large subunit precursor	Hs	cellular component	151	6.27e-41
tRNA (cytosine-2'-O-)-methyltransferase activity	Hs	molecular function	417	3.41e-147

GO (InterProScan)

5 results

GO Term	Analysis	Type	e-value
RNA methylation	Hamap	biological process	32.638
tRNA processing	PANTHER	biological process	1.7E-142
methyltransferase activity	Pfam	molecular function	1.3E-68
tRNA methyltransferase activity	PANTHER	molecular function	1.7E-142
methylation	Pfam	biological process	1.3E-68

Back to Top