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Gene Card

Best human hits

PSMD4

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00005114

Gene Model ID

KH2012:KH.C2.875

Location

KhC2:4654502..4657643

Transcript Models and Sequences

  KH2012:KH.C2.875.v1.A.ND1-1
KH2012:KH.C2.875.v1.A.nonSL2-1
KH2012:KH.C2.875.v1.A.nonSL3-1
KH2012:KH.C2.875.v1.A.nonSL4-1
KH2012:KH.C2.875.v1.A.nonSL5-1
KH2012:KH.C2.875.v1.A.nonSL7-1
KH2012:KH.C2.875.v1.A.nonSL8-1
KH2012:KH.C2.875.v1.A.SL6-1

External Database Gene Card

External database links

2 results

Database Gene ID
ENSEMBL ENSCING00000006425
NCBI Reference Sequence XM_002126813.4
Collections

Gateway full ORF

2 results

cien112511

Plate: VES88_B01

cima880686

Plate: VES68_D20

Gene collection 1 (N. Satoh)

2 results

cicl009m14

Plate: R1CiGC09b07

cieg032k02

Plate: R1CiGC20j02

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

8 results

IPR Term Analysis Definition
UIM_dom Pfam Ubiquitin interacting motif
VWF_A ProSiteProfiles von Willebrand factor, type A
UIM_dom SMART Ubiquitin interacting motif
VWF_A Pfam von Willebrand factor, type A
vWFA_dom_sf SUPERFAMILY von Willebrand factor A-like domain superfamily
VWF_A SMART von Willebrand factor, type A
UIM_dom ProSiteProfiles Ubiquitin interacting motif
vWFA_dom_sf Gene3D von Willebrand factor A-like domain superfamily

GOSlim

30 results

GO Term Annotation Origin Type
protein polyubiquitination Orthology biological process
RNA binding Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
cytoplasm Orthology cellular component
cytosol Orthology cellular component
transcription factor binding Orthology molecular function
identical protein binding Orthology molecular function
transmembrane transport Orthology biological process
negative regulation of canonical Wnt signaling pathway Orthology biological process
positive regulation of canonical Wnt signaling pathway Orthology biological process
intracellular signal transduction Orthology biological process
protein phosphorylation Orthology biological process
intracellular part Orthology cellular component
macromolecular complex Orthology cellular component
proteolysis Orthology biological process
G2/M transition of mitotic cell cycle Orthology biological process
peptidase activity, acting on L-amino acid peptides Orthology molecular function
cytokine-mediated signaling pathway Orthology biological process
transcription factor activity, sequence-specific DNA binding Orthology molecular function
cell surface receptor signaling pathway Orthology biological process
immune response Orthology biological process
mRNA catabolic process Orthology biological process
cellular protein modification process Orthology biological process
cell-cell signaling Orthology biological process
anatomical structure morphogenesis Orthology biological process
animal organ development Orthology biological process
immune system process Orthology biological process
cell differentiation Orthology biological process

GO (Orthology)

34 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
MAPK cascade Hs biological process
protein polyubiquitination Hs biological process
proteasome complex Hs cellular component
RNA binding Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
cytoplasm Hs cellular component
cytosol Hs cellular component
ubiquitin-dependent protein catabolic process Hs biological process
transcription factor binding Hs molecular function
proteasome regulatory particle, base subcomplex Hs cellular component
negative regulation of G2/M transition of mitotic cell cycle Hs biological process
protein deubiquitination Hs biological process
proteasome accessory complex Hs cellular component
anaphase-promoting complex-dependent catabolic process Hs biological process
SCF-dependent proteasomal ubiquitin-dependent protein catabolic process Hs biological process
polyubiquitin modification-dependent protein binding Hs molecular function
tumor necrosis factor-mediated signaling pathway Hs biological process
NIK/NF-kappaB signaling Hs biological process
Fc-epsilon receptor signaling pathway Hs biological process
identical protein binding Hs molecular function
proteasome-mediated ubiquitin-dependent protein catabolic process Hs biological process
proteasome assembly Hs biological process
regulation of mRNA stability Hs biological process
post-translational protein modification Hs biological process
T cell receptor signaling pathway Hs biological process
negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle Hs biological process
transmembrane transport Hs biological process
Wnt signaling pathway, planar cell polarity pathway Hs biological process
interleukin-1-mediated signaling pathway Hs biological process
negative regulation of canonical Wnt signaling pathway Hs biological process
positive regulation of canonical Wnt signaling pathway Hs biological process
regulation of hematopoietic stem cell differentiation Hs biological process

GO (Blast)

12 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
proteasome complex Hs cellular component 375 2.44e-129
RNA binding Hs molecular function 375 2.44e-129
protein binding Hs molecular function 375 2.44e-129
nucleus Hs cellular component 375 2.44e-129
nucleoplasm Hs cellular component 375 2.44e-129
cytoplasm Hs cellular component 375 2.44e-129
cytosol Hs cellular component 375 2.44e-129
transcription factor binding Hs molecular function 375 2.44e-129
proteasome regulatory particle, base subcomplex Hs cellular component 375 2.44e-129
proteasome accessory complex Hs cellular component 375 2.44e-129
polyubiquitin modification-dependent protein binding Hs molecular function 375 2.44e-129
identical protein binding Hs molecular function 375 2.44e-129

GO (InterProScan)

No result

GO Term Analysis Type e-value

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