Aniseed - Gene card

Gene Card

Best human hits

CDC16; CDC23; CDC27

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00005119

Gene Model ID

KH2012:KH.C2.88

Location

KhC2:1509794..1519487

Transcript Models and Sequences

External Database Gene Card

External database links

1 result

Database	Gene ID
NCBI Reference Sequence	XM_009859262.2

Collections

Gateway full ORF

4 results

Gene collection 1 (N. Satoh)

3 results

cicl104d06

Plate: R1CiGC39h10

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

7 results

IPR Term	Analysis	Definition
TPR_repeat	ProSiteProfiles	Tetratricopeptide repeat
TPR-like_helical_dom_sf	Gene3D	Tetratricopeptide-like helical domain superfamily
TPR_1	Pfam	Tetratricopeptide repeat 1
TPR_repeat	SMART	Tetratricopeptide repeat
TPR-contain_dom	ProSiteProfiles	Tetratricopeptide repeat-containing domain
TPR-like_helical_dom_sf	SUPERFAMILY	Tetratricopeptide-like helical domain superfamily
TPR_repeat	Pfam	Tetratricopeptide repeat

GOSlim

24 results

GO Term	Annotation Origin	Type
ubiquitin-protein transferase activity	Blast	molecular function
protein binding	Orthology	molecular function
intracellular	Blast	cellular component
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
cytoplasm	Orthology	cellular component
centrosome	Orthology	cellular component
microtubule organizing center	Blast	cellular component
cytosol	Orthology	cellular component
cytoskeleton	Blast	cellular component
cell proliferation	Orthology	biological process
membrane	Orthology	cellular component
integral component of membrane	Orthology	cellular component
protein ubiquitination	Orthology	biological process
cell division	Orthology	biological process
nuclear part	Orthology	cellular component
macromolecular complex	Orthology	cellular component
cytoskeletal part	Orthology	cellular component
microtubule cytoskeleton	Orthology	cellular component
microtubule	Orthology	cellular component
mitotic cell cycle phase transition	Orthology	biological process
enzyme binding	Orthology	molecular function
proteolysis	Orthology	biological process
protein polyubiquitination	Orthology	biological process

GO (Orthology)

20 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
anaphase-promoting complex	Hs	cellular component
cytoplasm	Hs	cellular component
centrosome	Hs	cellular component
spindle	Hs	cellular component
cytosol	Hs	cellular component
spindle microtubule	Hs	cellular component
metaphase/anaphase transition of mitotic cell cycle	Hs	biological process
cell proliferation	Hs	biological process
membrane	Hs	cellular component
integral component of membrane	Hs	cellular component
protein ubiquitination	Hs	biological process
protein phosphatase binding	Hs	molecular function
anaphase-promoting complex-dependent catabolic process	Hs	biological process
proteasome-mediated ubiquitin-dependent protein catabolic process	Hs	biological process
cell division	Hs	biological process
negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle	Hs	biological process
protein K11-linked ubiquitination	Hs	biological process

GO (Blast)

16 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
ubiquitin-protein transferase activity	Hs	molecular function	110	8.30e-25
protein binding	Hs	molecular function	692	0.0
intracellular	Hs	cellular component	110	8.30e-25
nucleus	Hs	cellular component	692	0.0
nucleoplasm	Hs	cellular component	692	0.0
anaphase-promoting complex	Hs	cellular component	692	0.0
cytoplasm	Hs	cellular component	692	0.0
centrosome	Hs	cellular component	692	0.0
microtubule organizing center	Hs	cellular component	78.2	1.09e-14
spindle	Hs	cellular component	692	0.0
cytosol	Hs	cellular component	692	0.0
cytoskeleton	Hs	cellular component	78.2	1.09e-14
spindle microtubule	Hs	cellular component	692	0.0
membrane	Hs	cellular component	692	0.0
integral component of membrane	Hs	cellular component	692	0.0
protein phosphatase binding	Hs	molecular function	692	0.0

GO (InterProScan)