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Gene Card

Best human hits

SYNE1; SYNE2; SYNE3

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00005687

Gene Model ID

KH2012:KH.C3.502

Location

KhC3:23934..99649

Transcript Models and Sequences

  KH2012:KH.C3.502.v1.A.SL3-1
KH2012:KH.C3.502.v2.A.nonSL6-1
KH2012:KH.C3.502.v2.A.SL1-1
KH2012:KH.C3.502.v3.A.nonSL6-1
KH2012:KH.C3.502.v3.A.SL1-1
KH2012:KH.C3.502.v4.A.ND4-1
KH2012:KH.C3.502.v5.A.SL2-1
KH2012:KH.C3.502.v6.A.SL5-1
KH2012:KH.C3.502.v7.A.SL5-1

External Database Gene Card

External database links

3 results

Database Gene ID
ENSEMBL ENSCING00000016687
NCBI Reference Sequence XM_018811169.1
NCBI Reference Sequence XM_018811170.1
Collections

Gateway full ORF

2 results

cien131678

Plate: VES90_L22

cien205667

Plate: VES102_L05

Gene collection 1 (N. Satoh)

2 results

cilv022i12

Plate: R1CiGC26n08

citb080b05

Plate: R1CiGC46o12

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term Analysis Definition
SYNE1 PANTHER Nesprin-1
Spectrin_repeat Pfam Spectrin repeat
KASH ProSiteProfiles KASH domain
KASH Pfam KASH domain
Spectrin/alpha-actinin SMART Spectrin/alpha-actinin
KASH SMART KASH domain

GOSlim

42 results

GO Term Annotation Origin Type
RNA binding Blast molecular function
actin binding Blast molecular function
protein binding Blast molecular function
nucleus Blast cellular component
nuclear envelope Blast cellular component
nucleoplasm Blast cellular component
nucleolus Blast cellular component
cytoplasm Blast cellular component
mitochondrion Blast cellular component
endoplasmic reticulum Blast cellular component
Golgi apparatus Blast cellular component
cytoskeleton Blast cellular component
plasma membrane Blast cellular component
focal adhesion Blast cellular component
cytoskeletal protein binding Blast molecular function
membrane Blast cellular component
integral component of membrane Blast cellular component
enzyme binding Blast molecular function
cell junction Blast cellular component
nuclear membrane Blast cellular component
nuclear lumen Blast cellular component
protein homodimerization activity Blast molecular function
postsynaptic membrane Blast cellular component
actin filament binding Blast molecular function
extracellular exosome Blast cellular component
cytoplasmic part Blast cellular component
intracellular non-membrane-bounded organelle Blast cellular component
macromolecular complex Blast cellular component
membrane part Blast cellular component
whole membrane Blast cellular component
nuclear outer membrane-endoplasmic reticulum membrane network Blast cellular component
bounding membrane of organelle Blast cellular component
intracellular part Blast cellular component
organelle part Blast cellular component
lamellipodium Blast cellular component
cell projection membrane Blast cellular component
cytoskeletal part Blast cellular component
endoplasmic reticulum membrane Blast cellular component
intrinsic component of membrane Blast cellular component
organelle organization InterProScan biological process
cell InterProScan cellular component
cellular protein localization InterProScan biological process

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type

GO (Blast)

39 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
P-body Hs cellular component 597 2.66e-170
RNA binding Hs molecular function 597 2.66e-170
actin binding Hs molecular function 597 2.66e-170
protein binding Hs molecular function 597 2.66e-170
lamin binding Hs molecular function 597 2.66e-170
nucleus Hs cellular component 597 2.66e-170
nuclear envelope Hs cellular component 597 2.66e-170
nuclear outer membrane Hs cellular component 597 2.66e-170
nucleoplasm Hs cellular component 597 2.66e-170
nucleolus Hs cellular component 597 2.66e-170
cytoplasm Hs cellular component 597 2.66e-170
mitochondrion Hs cellular component 520 3.86e-147
endoplasmic reticulum Hs cellular component 86.3 4.39e-16
rough endoplasmic reticulum Hs cellular component 86.3 4.39e-16
Golgi apparatus Hs cellular component 597 2.66e-170
cytoskeleton Hs cellular component 597 2.66e-170
plasma membrane Hs cellular component 520 3.86e-147
focal adhesion Hs cellular component 520 3.86e-147
cytoskeletal protein binding Hs molecular function 86.3 4.39e-16
membrane Hs cellular component 597 2.66e-170
integral component of membrane Hs cellular component 597 2.66e-170
aggresome Hs cellular component 520 3.86e-147
sarcoplasmic reticulum Hs cellular component 520 3.86e-147
enzyme binding Hs molecular function 597 2.66e-170
myofibril Hs cellular component 520 3.86e-147
sarcomere Hs cellular component 597 2.66e-170
Z disc Hs cellular component 520 3.86e-147
cell junction Hs cellular component 520 3.86e-147
lamellipodium membrane Hs cellular component 520 3.86e-147
filopodium membrane Hs cellular component 520 3.86e-147
nuclear membrane Hs cellular component 597 2.66e-170
nuclear lumen Hs cellular component 520 3.86e-147
sarcoplasmic reticulum membrane Hs cellular component 520 3.86e-147
LINC complex Hs cellular component 597 2.66e-170
protein homodimerization activity Hs molecular function 597 2.66e-170
intermediate filament cytoskeleton Hs cellular component 520 3.86e-147
postsynaptic membrane Hs cellular component 597 2.66e-170
actin filament binding Hs molecular function 597 2.66e-170
extracellular exosome Hs cellular component 520 3.86e-147

GO (InterProScan)

6 results

GO Term Analysis Type e-value
protein binding Pfam molecular function 1.7E-9
nuclear envelope PANTHER cellular component 0.0
integral component of membrane Pfam cellular component 7.9E-16
LINC complex PANTHER cellular component 0.0
actin filament binding PANTHER molecular function 0.0
cytoskeletal anchoring at nuclear membrane PANTHER biological process 0.0

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