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GENE CARD

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Gene Card

Best human hits

CALM1; CALM2; CALM3

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00005994

Gene Model ID

KH2012:KH.C3.79

Location

KhC3:6655839..6663835

Transcript Models and Sequences

  KH2012:KH.C3.79.v1.R.SL3-2
KH2012:KH.C3.79.v2.R.SL5-3
KH2012:KH.C3.79.v3.A.nonSL10-2
KH2012:KH.C3.79.v3.A.nonSL11-2
KH2012:KH.C3.79.v3.A.nonSL12-2
KH2012:KH.C3.79.v3.A.nonSL13-2
KH2012:KH.C3.79.v3.A.nonSL14-2
KH2012:KH.C3.79.v3.A.SL3-2
KH2012:KH.C3.79.v4.R.ND2-1
KH2012:KH.C3.79.v4.R.SL1-1
KH2012:KH.C3.79.v4.R.SL6-1
KH2012:KH.C3.79.v5.R.SL3-1
KH2012:KH.C3.79.v6.R.SL3-2
KH2012:KH.C3.79.v7.R.SL3-3
KH2012:KH.C3.79.v8.R.ND7-1
KH2012:KH.C3.79.v9.R.nonSL8-1
KH2012:KH.C3.79.v9.R.nonSL9-1
KH2012:KH.C3.79.v9.R.SL4-1

External Database Gene Card

External database links

2 results

Database Gene ID
ENSEMBL ENSCING00000008615
ENSEMBL ENSCING00000008616
Collections

Gateway full ORF

2 results

cima81385

Plate: VES56_F06

cima891080

Plate: VES70_H21

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term Analysis Definition
EF_hand_dom CDD EF-hand domain
EF_hand_dom ProSiteProfiles EF-hand domain
EF_Hand_1_Ca_BS ProSitePatterns EF-Hand 1, calcium-binding site
EF-hand-dom_pair SUPERFAMILY EF-hand domain pair
EF_hand_dom SMART EF-hand domain
EF_hand_dom Pfam EF-hand domain

GOSlim

35 results

GO Term Annotation Origin Type
calcium ion binding Blast molecular function
protein binding Blast molecular function
extracellular region Blast cellular component
nucleus Blast cellular component
nucleoplasm Blast cellular component
cytoplasm Blast cellular component
centrosome Blast cellular component
cytosol Blast cellular component
cytoskeleton Blast cellular component
plasma membrane Blast cellular component
kinase activity Blast molecular function
protein kinase binding Blast molecular function
vesicle Blast cellular component
macromolecular complex Blast cellular component
metal ion binding Blast molecular function
extracellular exosome Blast cellular component
cytoskeletal part Blast cellular component
microtubule cytoskeleton Blast cellular component
enzyme binding Blast molecular function
molecular function regulator Blast molecular function
microtubule Blast cellular component
phosphotransferase activity, alcohol group as acceptor Blast molecular function
ion transport Blast biological process
transmembrane transport Blast biological process
metal ion transport Blast biological process
cytoplasmic part Blast cellular component
organelle part Blast cellular component
intracellular non-membrane-bounded organelle Blast cellular component
cytoskeletal protein binding Blast molecular function
protein N-terminus binding Blast molecular function
integral component of membrane Blast cellular component
enzyme activator activity Blast molecular function
protein serine/threonine kinase activity Blast molecular function
protein dephosphorylation Blast biological process
regulation of cellular metabolic process Blast biological process

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type

GO (Blast)

34 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
spindle pole Hs cellular component 290 7.58e-103
Ras guanyl-nucleotide exchange factor activity Hs molecular function 288 3.90e-102
calcium ion binding Hs molecular function 290 7.58e-103
protein binding Hs molecular function 290 7.58e-103
extracellular region Hs cellular component 288 3.90e-102
nucleus Hs cellular component 290 7.58e-103
nucleoplasm Hs cellular component 288 3.90e-102
cytoplasm Hs cellular component 290 7.58e-103
centrosome Hs cellular component 290 7.58e-103
spindle Hs cellular component 290 7.58e-103
cytosol Hs cellular component 288 3.90e-102
cytoskeleton Hs cellular component 290 7.58e-103
spindle microtubule Hs cellular component 290 7.58e-103
plasma membrane Hs cellular component 290 7.58e-103
adenylate cyclase binding Hs molecular function 290 7.58e-103
inositol-1,4,5-trisphosphate 3-kinase activity Hs molecular function 288 3.90e-102
ligand-gated ion channel activity Hs molecular function 288 3.90e-102
kinase activity Hs molecular function 290 7.58e-103
calcium channel inhibitor activity Hs molecular function 288 3.90e-102
protein kinase binding Hs molecular function 290 7.58e-103
protein domain specific binding Hs molecular function 290 7.58e-103
sarcomere Hs cellular component 290 7.58e-103
titin binding Hs molecular function 290 7.58e-103
vesicle Hs cellular component 290 7.58e-103
N-terminal myristoylation domain binding Hs molecular function 290 7.58e-103
macromolecular complex Hs cellular component 290 7.58e-103
calcium channel complex Hs cellular component 290 7.58e-103
protein serine/threonine kinase activator activity Hs molecular function 290 7.58e-103
ion channel binding Hs molecular function 290 7.58e-103
metal ion binding Hs molecular function 290 7.58e-103
extracellular exosome Hs cellular component 290 7.58e-103
protein phosphatase activator activity Hs molecular function 290 7.58e-103
disordered domain specific binding Hs molecular function 290 7.58e-103
catalytic complex Hs cellular component 290 7.58e-103

GO (InterProScan)

1 result

GO Term Analysis Type e-value
calcium ion binding CDD molecular function 2.89762E-24

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