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  3. Gene 'KH2012:KH.C4.167'

Gene Card

Best human hits

GFM1; GFM2; GUF1

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00006235

Gene Model ID

KH2012:KH.C4.167

Location

KhC4:3103490..3109668

Transcript Models and Sequences

  KH2012:KH.C4.167.v1.A.SL2-1
KH2012:KH.C4.167.v2.A.nonSL3-1
KH2012:KH.C4.167.v2.A.nonSL4-1
KH2012:KH.C4.167.v2.R.ND1-1

External Database Gene Card

External database links

4 results

Database Gene ID
ENSEMBL ENSCING00000003377
NCBI Reference Sequence XM_002131295.3
NCBI Reference Sequence XM_018811574.1
NCBI Reference Sequence XM_018811575.1
Collections

Gateway full ORF

2 results

cien107867

Plate: VES87_C03

cien186997

Plate: VES99_I04

Gene collection 1 (N. Satoh)

1 result

cieg003p10

Plate: R1CiGC15p02

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

14 results

IPR Term Analysis Definition
Transl_B-barrel_sf SUPERFAMILY Translation protein, beta-barrel domain superfamily
Ribosomal_S5_D2-typ_fold_subgr Gene3D Ribosomal protein S5 domain 2-type fold, subgroup
EFG_III/V SUPERFAMILY EF-G domain III/V-like
P-loop_NTPase SUPERFAMILY P-loop containing nucleoside triphosphate hydrolase
Ribosomal_S5_D2-typ_fold SUPERFAMILY Ribosomal protein S5 domain 2-type fold
EFG_III CDD Elongation factor G, domain III
EFTu-like_2 Pfam Translation elongation factor EFTu-like, domain 2
EFG_V-like SMART Elongation factor EFG, domain V-like
EFG_V CDD EFG, domain V
EFG_V-like Pfam Elongation factor EFG, domain V-like
TF_GTP-bd_dom PRINTS Transcription factor, GTP-binding domain
TF_GTP-bd_dom ProSiteProfiles Transcription factor, GTP-binding domain
Small_GTP-bd_dom TIGRFAM Small GTP-binding protein domain
TF_GTP-bd_dom Pfam Transcription factor, GTP-binding domain

GOSlim

14 results

GO Term Annotation Origin Type
nucleotide binding Orthology molecular function
RNA binding Orthology molecular function
GTPase activity Orthology molecular function
protein binding Orthology molecular function
GTP binding Orthology molecular function
intracellular Blast cellular component
mitochondrion Orthology cellular component
mitochondrial inner membrane Blast cellular component
mitochondrial matrix Orthology cellular component
membrane Blast cellular component
hydrolase activity Blast molecular function
regulation of gene expression Orthology biological process
organelle organization Orthology biological process
macromolecular complex binding Blast molecular function

GO (Orthology)

12 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
nucleotide binding Hs molecular function
translation elongation factor activity Hs molecular function
GTPase activity Hs molecular function
protein binding Hs molecular function
GTP binding Hs molecular function
mitochondrion Hs cellular component
mitochondrial matrix Hs cellular component
translation Hs biological process
translational elongation Hs biological process
mitochondrial translation Hs biological process
ribosome disassembly Hs biological process
mitochondrial translational termination Hs biological process

GO (Blast)

13 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
nucleotide binding Hs molecular function 563 0.0
RNA binding Hs molecular function 319 5.35e-98
translation elongation factor activity Hs molecular function 563 0.0
GTPase activity Hs molecular function 563 0.0
protein binding Hs molecular function 563 0.0
GTP binding Hs molecular function 563 0.0
intracellular Hs cellular component 319 5.35e-98
mitochondrion Hs cellular component 563 0.0
mitochondrial inner membrane Hs cellular component 98.6 3.24e-21
mitochondrial matrix Hs cellular component 563 0.0
membrane Hs cellular component 98.6 3.24e-21
hydrolase activity Hs molecular function 98.6 3.24e-21
ribosome binding Hs molecular function 98.6 3.24e-21

GO (InterProScan)

2 results

GO Term Analysis Type e-value
GTPase activity Pfam molecular function 1.5E-63
GTP binding Pfam molecular function 1.5E-63

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