Aniseed - Gene card

Gene Card

Best human hits

ARHGEF17; ECT2; FGD6

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00006283

Gene Model ID

KH2012:KH.C4.21

Location

KhC4:3665502..3673953

Transcript Models and Sequences

KH2012:KH.C4.21.v1.A.nonSL5-1
KH2012:KH.C4.21.v1.A.nonSL6-1
KH2012:KH.C4.21.v1.A.nonSL7-1
KH2012:KH.C4.21.v1.A.nonSL8-1
KH2012:KH.C4.21.v1.R.ND2-1
KH2012:KH.C4.21.v2.A.SL11-1
KH2012:KH.C4.21.v2.A.SL3-1
KH2012:KH.C4.21.v2.A.SL9-1
KH2012:KH.C4.21.v2.R.ND1-1
KH2012:KH.C4.21.v3.A.SL4-1
KH2012:KH.C4.21.v4.A.SL10-1

External Database Gene Card

External database links

3 results

Database	Gene ID
ENSEMBL	ENSCING00000013517
ENSEMBL	ENSCING00000013518
NCBI Reference Sequence	XM_009860026.2

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

cign053b18

Plate: R1CiGC42j23

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

9 results

IPR Term	Analysis	Definition
DH-domain	Pfam	Dbl homology (DH) domain
GDS_CDC24_CS	ProSitePatterns	Guanine-nucleotide dissociation stimulator, CDC24, conserved site
DH-domain	CDD	Dbl homology (DH) domain
DH-domain	ProSiteProfiles	Dbl homology (DH) domain
DH-domain	SMART	Dbl homology (DH) domain
DBL_dom_sf	SUPERFAMILY	Dbl homology (DH) domain superfamily
PH-like_dom_sf	Gene3D	PH-like domain superfamily
Ect2	PANTHER	Guanine nucleotide exchange factor Ect2
DBL_dom_sf	Gene3D	Dbl homology (DH) domain superfamily

GOSlim

30 results

GO Term	Annotation Origin	Type
cell morphogenesis	InterProScan	biological process
signal transducer activity	Blast	molecular function
GTPase activator activity	Blast	molecular function
protein binding	Orthology	molecular function
nucleus	Blast	cellular component
cytoplasm	Blast	cellular component
Golgi apparatus	Blast	cellular component
cytosol	Blast	cellular component
cytoskeleton	Blast	cellular component
lamellipodium	Blast	cellular component
cell junction	Blast	cellular component
midbody	Blast	cellular component
intracellular signal transduction	InterProScan	biological process
protein homodimerization activity	Blast	molecular function
metal ion binding	Blast	molecular function
cell division	InterProScan	biological process
regulation of molecular function	Orthology	biological process
enzyme binding	Orthology	molecular function
molecular function regulator	Orthology	molecular function
small GTPase mediated signal transduction	Orthology	biological process
regulation of signal transduction	Orthology	biological process
cell projection	Blast	cellular component
plasma membrane region	Blast	cellular component
cell leading edge	Blast	cellular component
cytoskeletal part	Blast	cellular component
microtubule cytoskeleton	Blast	cellular component
macromolecular complex	Blast	cellular component
membrane organization	InterProScan	biological process
cell development	InterProScan	biological process
neuron differentiation	InterProScan	biological process

GO (Orthology)

5 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
guanyl-nucleotide exchange factor activity	Hs	molecular function
Rho guanyl-nucleotide exchange factor activity	Hs	molecular function
protein binding	Hs	molecular function
regulation of Rho protein signal transduction	Hs	biological process
regulation of molecular function	Hs	biological process

GO (Blast)

24 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
ruffle	Hs	cellular component	82.4	3.12e-16
signal transducer activity	Hs	molecular function	283	5.54e-85
guanyl-nucleotide exchange factor activity	Hs	molecular function	283	5.54e-85
Rho guanyl-nucleotide exchange factor activity	Hs	molecular function	283	5.54e-85
GTPase activator activity	Hs	molecular function	283	5.54e-85
protein binding	Hs	molecular function	283	5.54e-85
nucleus	Hs	cellular component	283	5.54e-85
cytoplasm	Hs	cellular component	283	5.54e-85
Golgi apparatus	Hs	cellular component	82.4	3.12e-16
spindle	Hs	cellular component	283	5.54e-85
cytosol	Hs	cellular component	283	5.54e-85
cytoskeleton	Hs	cellular component	283	5.54e-85
cell-cell junction	Hs	cellular component	283	5.54e-85
bicellular tight junction	Hs	cellular component	283	5.54e-85
Rho GTPase binding	Hs	molecular function	283	5.54e-85
lamellipodium	Hs	cellular component	82.4	3.12e-16
cell junction	Hs	cellular component	283	5.54e-85
midbody	Hs	cellular component	283	5.54e-85
small GTPase binding	Hs	molecular function	82.4	3.12e-16
cleavage furrow	Hs	cellular component	283	5.54e-85
protein homodimerization activity	Hs	molecular function	283	5.54e-85
metal ion binding	Hs	molecular function	82.4	3.12e-16
mitotic spindle	Hs	cellular component	283	5.54e-85
centralspindlin complex	Hs	cellular component	283	5.54e-85

GO (InterProScan)

10 results

GO Term	Analysis	Type	e-value
cell morphogenesis	PANTHER	biological process	3.0E-113
cytokinesis	PANTHER	biological process	3.0E-113
guanyl-nucleotide exchange factor activity	PANTHER	molecular function	3.0E-113
Rho guanyl-nucleotide exchange factor activity	SMART	molecular function	7.6E-45
GTPase activator activity	PANTHER	molecular function	3.0E-113
nucleus	PANTHER	cellular component	3.0E-113
cytoplasm	PANTHER	cellular component	3.0E-113
regulation of Rho protein signal transduction	SMART	biological process	7.6E-45
intracellular signal transduction	ProSitePatterns	biological process
positive regulation of neuron differentiation	PANTHER	biological process	3.0E-113